BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3493758 =	NA (NA)	13 (0.140)	9/162	NT	NA	noncoding (1/26 nt)	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	3493784 =	NA (NA)	13 (0.140)	9/162	NT	NA	intergenic (+35/‑227)	tsgA/nirB	putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding

Only 100 of 130 total aligned reads displayed.

AAACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAC  >  NC_000913/3493659‑3493856

aaaCGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCGTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATg                                                                                                    >  1:514937/1‑100 (MQ=255)

 aaCGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGc                                                                                                   <  2:2888761/100‑1 (MQ=255)

 aaCGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGc                                                                                                   >  1:1743405/1‑100 (MQ=255)

    acggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCgg                                                                                                >  2:929910‑M1/96‑100 (MQ=255)

    acggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCgg                                                                                                >  1:838495‑M1/96‑100 (MQ=255)

    acggaattgtctaatatttcatgtttttgcaaaaaatagacaaaatgagcggatttataaaaatagatgcacgtagcgggggaagagaggaaaagGCCg                                                                                                 >  1:1436572‑M1/96‑99 (MQ=255)

     cggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGa                                                                                               >  1:1020892‑M1/95‑100 (MQ=255)

      ggaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGAc                                                                                              >  2:2632736‑M1/94‑100 (MQ=255)

       gaattgtctgatatttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACg                                                                                             <  2:2617604‑M1/8‑1 (MQ=255)

       cTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCTTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACg                                                                                             <  1:1112260/100‑1 (MQ=255)

       cTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGTCCTCTCATTAATTGCTCATGCCGGACg                                                                                             <  1:209495/100‑1 (MQ=255)

       cTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGa                                                                                               <  2:2246393/98‑1 (MQ=255)

         gTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGc                                                                                           <  2:1984814/100‑1 (MQ=255)

         gTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGc                                                                                           >  1:1639348/1‑100 (MQ=255)

          tACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCa                                                                                          <  2:1759143/100‑1 (MQ=255)

          tACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCa                                                                                          <  1:576698/100‑1 (MQ=255)

          tACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCa                                                                                          >  2:1631414/1‑100 (MQ=255)

          tACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCa                                                                                          <  2:1639352/100‑1 (MQ=255)

            cGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACACTGACCTCTCATTAATTGCTCATGCCGGACGGCACt                                                                                        >  1:465171/1‑100 (MQ=255)

              cTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAt                                                                                      >  2:458840/1‑100 (MQ=255)

              cTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAt                                                                                      >  2:2833093/1‑100 (MQ=255)

                  cgtcTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGACACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTAtcgt                                                                                   <  1:1070152/99‑1 (MQ=255)

                    tcTTTGTGATGTGCTTCCTGTTAGGTTTCTTCAGCCGTCACCGTCAGCATAACCCCCTGACCTCTCCTTATTTGCTCATGCCGGACTGCACTAtcgtcg                                                                                 >  1:39558/1‑99 (MQ=255)

                     ttcatgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCgtcgtc                                                                               <  1:2008347‑M1/22‑1 (MQ=255)

                        tgtgATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCgg                                                                            >  1:512329/1‑100 (MQ=255)

                        tgtgATGTGCGTCCAGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCgg                                                                            >  1:374350/1‑100 (MQ=255)

                        atgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCgg                                                                            >  2:892015‑M1/76‑100 (MQ=255)

                         tgtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGc                                                                           >  2:2706285‑M1/75‑100 (MQ=255)

                         tgtttgtacaaaaaatagaaaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagggaggaaaagGCTAGACGGCACTATCGTCGTCCGGc                                                                           >  1:251328‑M1/75‑100 (MQ=255)

                          gtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGcc                                                                          >  1:1806658‑M1/74‑100 (MQ=255)

                          gtttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGcc                                                                          >  2:2008354‑M1/74‑100 (MQ=255)

                           tttgtgcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGCCt                                                                         >  2:2316708‑M1/73‑100 (MQ=255)

                             tgtgCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCttt                                                                       <  2:1226844/100‑1 (MQ=255)

                               tgcaaaaaatagaccaaatgagcgggtttatagaaatagatgcacgtagtggcggaacagaggaagagGCCGGACGGCACTATCGTCGTCCGGCCTGTTc                                                                     >  1:925866‑M1/69‑100 (MQ=255)

                               tgCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCtttt                                                                      >  1:2357159/1‑99 (MQ=255)

                                gcaaaaaatagacaaaatgagcgggtttatagaaatagatgcacgtagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    >  2:328771‑M1/68‑100 (MQ=255)

                                gCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACTCCCCGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    <  2:427497/100‑1 (MQ=255)

                                gCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    <  2:2711294/100‑1 (MQ=255)

                                gCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTcc                                                                    <  1:1874796/100‑1 (MQ=255)

                                 cTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCct                                                                   <  1:2771842/100‑1 (MQ=255)

                                 cTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCct                                                                   >  1:2195463/1‑100 (MQ=255)

                                  ttCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctc                                                                  <  2:2689453/100‑1 (MQ=255)

                                  ttCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctc                                                                  <  1:662733/100‑1 (MQ=255)

                                  ttCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctc                                                                  <  2:406210/100‑1 (MQ=255)

                                  gtCCTGTTAGGTTCCGACAGCCGACACCGTCAGCATAACACCCTGACGTATAATTACTATCTCATGCCGGACGTCACTATCGTCGACCg                                                                             >  1:2589484/2‑89 (MQ=255)

                                    aaaatagacaaaatgagcgagtttaaagaaatagatgcgcttagcgggggaagagaggaaaagGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctctc                                                                >  1:2144841‑M1/64‑100 (MQ=255)

                                     cTGTTAGGTCTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCctctct                                                               >  1:462539/1‑100 (MQ=255)

                                       gTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTc                                                             >  1:230072/1‑100 (MQ=255)

                                         tAGGTTTCGTCAGCCGTCACCTTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTACCGTCGTCCGTCCTTTTCCCCTCTTccc                                                           >  1:2315026/1‑100 (MQ=255)

                                          aGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTcccc                                                          >  1:221089/1‑100 (MQ=255)

                                             tttCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCGCTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGc                                                       >  2:110737/1‑100 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   <  2:2677810/100‑1 (MQ=255)

                                                 gTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACg                                                   >  1:1528670/1‑100 (MQ=255)

                                                   cAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTg                                                 <  2:2461968/100‑1 (MQ=255)

                                                      ctgtcaccgtcaGCATAACACCCTGACCTCTCATTAATTGTTCATGCCGGGCGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTACCCTGCTACGTGCAt                                              >  2:1462668/3‑100 (MQ=255)

                                                       cgtcaccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATc                                             >  1:371239/1‑100 (MQ=255)

                                                            ccgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTAttt                                        >  1:47112/1‑100 (MQ=255)

                                                             cgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTc                                       <  2:2293951/100‑1 (MQ=255)

                                                             cgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTc                                       <  1:2833083/100‑1 (MQ=255)

                                                             cgtcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTc                                       <  2:400398/100‑1 (MQ=255)

                                                               tcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCta                                     <  1:99053/100‑1 (MQ=255)

                                                               tcaGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCta                                     <  1:46190/100‑1 (MQ=255)

                                                                caGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCtat                                    >  2:531717/1‑100 (MQ=255)

                                                                caGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCtat                                    <  2:905712/100‑1 (MQ=255)

                                                                 aGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCtata                                   >  1:1172873/1‑100 (MQ=255)

                                                                 aGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCtata                                   <  1:1137545/100‑1 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  1:830754/1‑100 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  1:237456/1‑100 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  2:1178342/1‑100 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  1:2804785/1‑100 (MQ=255)

                                                                  gCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATaa                                  >  1:650757/1‑100 (MQ=255)

                                                                     tAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAAc                                >  1:726317/1‑99 (MQ=255)

                                                                     tAACACCCTGACCTCCCATTAATTACTAATGCCGGCCGGCCGTACCGTCATCCGACCTTTTCCCCCCTCCCCCCGCTACGTGCCTCTACTTCTATaaa                                 >  1:1757477/1‑98 (MQ=255)

                                                                      aatgcccTGTCCTCTCATTAATTGTTCATTCCTGATGGCACAATCGTCGTCCTGTCTTTTCCTCTCTACCCCCGATACGTGCATCTATTTCTATAAAcc                               <  1:2749503/95‑1 (MQ=255)

                                                                       acacCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCg                             >  2:1113296/1‑100 (MQ=255)

                                                                              gACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCAttt                      <  2:1080267/100‑1 (MQ=255)

                                                                               aCCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCAtttt                     <  2:1232389/100‑1 (MQ=255)

                                                                                ccTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    >  1:1125284/1‑100 (MQ=255)

                                                                                ccTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    <  1:2242629/100‑1 (MQ=255)

                                                                                ccTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTg                    <  2:726319/100‑1 (MQ=255)

                                                                                  tctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTc                  <  2:813181/100‑1 (MQ=255)

                                                                                   ctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTTTTCTTTTTTCCCGCGACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCt                 >  1:1956344/1‑100 (MQ=255)

                                                                                   ctcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCt                 >  1:379094/1‑100 (MQ=255)

                                                                                    tcATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTa                <  1:425222/100‑1 (MQ=255)

                                                                                      aTTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTAtt              >  1:871480/1‑100 (MQ=255)

                                                                                      aTTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTAtt              >  1:871551/1‑100 (MQ=255)

                                                                                          aTTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTAtttttt          <  2:2538220/100‑1 (MQ=255)

                                                                                           ttGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTAtttttt          >  1:2431207/1‑99 (MQ=255)

                                                                                           ttGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTg         <  2:1218730/100‑1 (MQ=255)

                                                                                           ttGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTg         <  2:1440460/100‑1 (MQ=255)

                                                                                            tGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGc        >  2:832472/1‑100 (MQ=255)

                                                                                            tGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGc        <  2:2093245/100‑1 (MQ=255)

                                                                                             gCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGca       <  1:403658/100‑1 (MQ=255)

                                                                                             gCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGca       >  1:974017/1‑100 (MQ=255)

                                                                                             gCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCCCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGca       >  1:2576080/1‑100 (MQ=255)

                                                                                               tCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGcaca     >  2:2856423/1‑100 (MQ=255)

                                                                                                cATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACaa    >  2:1406631/1‑100 (MQ=255)

                                                                                                  tGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAc  >  2:452559/1‑100 (MQ=255)

                                                                                                  tGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAc  <  1:2272320/100‑1 (MQ=255)

                                                                                                  tGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAc  >  1:1035434/1‑100 (MQ=255)

AAACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGGCACTATCGTCGTCCGGCCTTTTCCTCTCTTCCCCCGCTACGTGCATCTATTTCTATAAACCCGCTCATTTTGTCTATTTTTTGCACAAAC  >  NC_000913/3493659‑3493856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.