| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3765506 | 4 (0.040) | 4 (0.040) | 4/170 | NT | 51.2% | coding (3324/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3765524 | NA (NA) | coding (3342/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
GGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGA > NC_000913/3765407‑3765605 | ggATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCT < 2:1240265‑M1/100‑1 (MQ=255)ggATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCT < 1:827539‑M1/100‑1 (MQ=255)ggATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCT < 1:813877‑M1/100‑1 (MQ=255)ggATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCT > 1:2003239‑M1/1‑100 (MQ=255)ggATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCT > 1:2470059‑M1/1‑100 (MQ=255) gaggcgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTg < 2:1316235/97‑1 (MQ=17) gATGCGCTTCAGCAGTCCGGTGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTg > 1:1105997/1‑100 (MQ=14) aTGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGa > 2:672761/1‑100 (MQ=32) tGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc > 1:1082974/1‑100 (MQ=32) tGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAc < 2:2024146/100‑1 (MQ=33) gcgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc < 1:190010/100‑1 (MQ=32) gcgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc < 2:1983381/100‑1 (MQ=32) cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTTCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg < 1:1857846/100‑1 (MQ=14) cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAATGTGAAATCCTGGCTGACCg < 1:80525/100‑1 (MQ=14) cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 2:817550/1‑100 (MQ=31) cgcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 1:883042/1‑100 (MQ=31) gcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGGTCGACCGGCTGGACAGTGAAATCCTGGGTGACCgg > 1:2672585/1‑100 (MQ=2) gcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgg > 2:287751/1‑100 (MQ=11) gcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgg > 2:2253914/1‑100 (MQ=11) gcTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgg > 2:1595372/1‑100 (MQ=11) gAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGAAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccagg < 1:2039865‑M1/100‑26 (MQ=255) gACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccaggatt < 2:804166‑M1/100‑29 (MQ=255) gACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccaggat < 1:1475652‑M1/99‑28 (MQ=255) ggtggtAGTGTGGTGTTCCCGCCGTGGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTttcctcactcacccggtcagccaggatttca < 1:1090956‑M1/100‑32 (MQ=255) ggCTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggagcaccacactgccaccgtcttcgcc > 1:348222‑M1/1‑4 (MQ=255) gCTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccg < 2:2361295‑M1/100‑98 (MQ=255) gCTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccg > 1:2294612‑M1/1‑3 (MQ=255) cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgc > 1:1450374‑M1/1‑2 (MQ=255) cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgc > 2:1295535‑M1/1‑2 (MQ=255) cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgc > 1:400375‑M1/1‑2 (MQ=255) cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgc < 1:1048665‑M1/100‑99 (MQ=255) cTttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaacggcgggaacaccacactgccaccgtcttcgccgc > 2:2427498‑M1/1‑2 (MQ=255) tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc < 2:1410977‑M1/100‑100 (MQ=255) tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc > 2:2016265‑M1/1‑1 (MQ=255) tttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgggaacaccacactgccaccgtcttcgccgcc < 2:422867‑M1/100‑100 (MQ=255) | GGATGCGCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGA > NC_000913/3765407‑3765605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |