New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3962703NA (NA)6 (0.060) 5/166 NT NA noncoding (4/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3962735 NA (NA)noncoding (36/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 152 total aligned reads displayed.

AGCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAA  >  NC_000913/3962604‑3962800
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aGCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAg                                                                                                    >  2:2740338/1‑100 (MQ=255)
 gcgcAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGg                                                                                                   <  1:626949‑M1/100‑2 (MQ=255)
    cAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccg                                                                                                >  1:653873‑M1/1‑96 (MQ=255)
     aaaGTGGTCAGCGCCTAAGAACGGATAGAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccgg                                                                                               <  1:48749‑M1/100‑6 (MQ=255)
     aaaGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccgg                                                                                               >  2:141155‑M1/1‑95 (MQ=255)
     aaaGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccgg                                                                                               <  2:878707‑M1/100‑6 (MQ=255)
        gTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGaaa                                                                                            >  2:1986384/1‑100 (MQ=255)
          ggaaaGCGCCGAAGAAGGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGaaaa                                                                                           <  1:2561177/95‑1 (MQ=255)
          ggTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAg                                                                                          >  1:113504/1‑100 (MQ=255)
           gTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                         <  2:2495826/100‑1 (MQ=255)
           gTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGa                                                                                         >  1:1469964/1‑100 (MQ=255)
            tCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGAt                                                                                        >  1:1816421/1‑100 (MQ=255)
             cAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccggatgcgatg                                                                                       >  2:530632‑M1/1‑87 (MQ=255)
               gcgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg                                                                                     >  2:936667/1‑100 (MQ=255)
               gcgcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCg                                                                                     <  2:1567784/100‑1 (MQ=255)
                 gcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTc                                                                                   >  2:102338/1‑100 (MQ=255)
                 gcCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTc                                                                                   >  2:2200186/1‑100 (MQ=255)
                   cGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAg                                                                                 >  1:1365894/1‑100 (MQ=255)
                   cGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAg                                                                                 >  2:2101412/1‑100 (MQ=255)
                     aagaaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgca                                                                               >  2:1922667/1‑100 (MQ=255)
                      agaaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAAGAATCAAGGCCGGAAAAGATGCGTCAgcat                                                                              >  1:1745177/1‑100 (MQ=255)
                        aaCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcg                                                                            <  2:1301495/100‑1 (MQ=255)
                         aCGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgc                                                                           >  2:2040573/1‑100 (MQ=255)
                          cGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgca                                                                          >  2:797606/1‑100 (MQ=255)
                          cGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgca                                                                          >  2:509570/1‑100 (MQ=255)
                          cGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAgcatcgca                                                                          <  1:2099186/100‑1 (MQ=255)
                            gATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATC                                                                        <  2:2831888‑M2/100‑1 (MQ=255)
                              tGCGGAAAGGGCAAAGCCATCGGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCG                                                                      <  1:577121‑M2/100‑1 (MQ=255)
                              tGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCG                                                                      <  2:1505925‑M2/100‑1 (MQ=255)
                                cAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGC                                                                    <  1:683436‑M2/100‑1 (MQ=255)
                                cAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCG                                                                      <  1:530631‑M2/98‑1 (MQ=255)
                                  gAAAGGGCAAAGACATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccggatgcgatgctgacgcatcttttccggcct                                                                  <  1:1218837‑M1/100‑35 (MQ=255)
                                      gggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTAc                                                              >  1:2150726/1‑100 (MQ=255)
                                       ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                             >  2:362280/1‑100 (MQ=255)
                                       ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                             <  2:315451/100‑1 (MQ=255)
                                       ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                             >  2:906977/1‑100 (MQ=255)
                                        gCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGgccggatgcgatgctgacgcatcttttccggccttgatta                                                            <  1:1140235‑M1/100‑41 (MQ=255)
                                         cAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa                                                           >  2:1982395/1‑100 (MQ=255)
                                           aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                         >  1:1971674/1‑100 (MQ=255)
                                            aGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTa                                                        >  1:409133/1‑100 (MQ=255)
                                             ccgaTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTaa                                                       <  2:1738852/97‑1 (MQ=255)
                                               cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATg                                                     >  1:2828025/1‑100 (MQ=255)
                                                aTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                    <  2:974360/100‑1 (MQ=255)
                                                aTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                    <  2:2523268/100‑1 (MQ=255)
                                                aTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                    <  1:637888/100‑1 (MQ=255)
                                                 tCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCa                                                   <  1:267790/100‑1 (MQ=255)
                                                    ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTaaagatcgg                                                >  1:1738847/1‑93 (MQ=255)
                                                    ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACtt                                                >  1:740267/1‑100 (MQ=255)
                                                    ggCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACtt                                                >  2:1459680/1‑100 (MQ=255)
                                                      cGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc                                              <  1:347120/100‑1 (MQ=255)
                                                      cGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc                                              <  2:717781/100‑1 (MQ=255)
                                                         aTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGc                                           <  1:569571/100‑1 (MQ=255)
                                                          tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                          <  1:286262/100‑1 (MQ=255)
                                                          tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                          <  2:216483/100‑1 (MQ=255)
                                                           cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCgg                                         >  2:1538931/1‑100 (MQ=255)
                                                            tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                        >  2:2657378/1‑100 (MQ=255)
                                                            tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                        >  2:457601/1‑100 (MQ=255)
                                                            tGAAAGCGATGATGGCGGCAAAACAAGGGAAATAATCAAGGCCGGAAAAGATTCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCCGCGGc                                        >  1:2457176/1‑100 (MQ=255)
                                                             gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCTGAAAATATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                       <  1:123943/100‑1 (MQ=255)
                                                             gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                       <  2:505069/100‑1 (MQ=255)
                                                             gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                       <  1:816571/100‑1 (MQ=255)
                                                              aaaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCa                                      >  1:494896/1‑100 (MQ=255)
                                                               aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg                                     <  2:2852890/100‑1 (MQ=255)
                                                                aGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGt                                    <  1:538188/100‑1 (MQ=255)
                                                                   gatgatGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGa                                 <  1:1239891/100‑1 (MQ=255)
                                                                      gatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACAt                              <  1:2181736/100‑1 (MQ=255)
                                                                       gatctggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATa                             <  2:730266/95‑1 (MQ=255)
                                                                        tgGCGGCAAAACGAGGGAAATAATCAAGGCAGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCGGTGGACATAg                            >  1:1908964/1‑100 (MQ=255)
                                                                         ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                           <  1:2706814/100‑1 (MQ=255)
                                                                         ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                           >  2:812649/1‑100 (MQ=255)
                                                                         ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                           >  2:812856/1‑100 (MQ=255)
                                                                           cggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGctc                         <  2:1126924/100‑1 (MQ=255)
                                                                           cggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGctc                         >  2:1572397/1‑100 (MQ=255)
                                                                            ggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGctct                        <  1:2264306/100‑1 (MQ=255)
                                                                               aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑cc                    <  2:1846359/100‑1 (MQ=255)
                                                                               aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑cc                    <  2:2350307/100‑1 (MQ=255)
                                                                               aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑cc                    <  1:1922659/100‑1 (MQ=255)
                                                                               aaaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑cc                    <  1:141154/100‑1 (MQ=255)
                                                                                aaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCa                   >  1:2315263/1‑100 (MQ=255)
                                                                                aaaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCACCGCATCCGGCAATTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑c                     <  1:1622687/98‑1 (MQ=255)
                                                                                 aaCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCAc                  >  2:895810/1‑100 (MQ=255)
                                                                                    gAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTgg               <  1:2112947/100‑1 (MQ=255)
                                                                                        gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCttt           >  2:2034408/1‑100 (MQ=255)
                                                                                         aaaTAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCAGCCAGTGG‑CAGAGCTATGTCCACTGGccgct          <  2:402981/100‑5 (MQ=25)
                                                                                          aataatCAAGGCCGGAAAAGCTGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTcc         <  2:2102198/100‑1 (MQ=255)
                                                                                          aataatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTcc         <  1:1086166/100‑1 (MQ=255)
                                                                                          aataatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTcc         <  2:1476607/100‑1 (MQ=255)
                                                                                           ataatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCt        <  2:1365896/100‑1 (MQ=255)
                                                                                            taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCcttgattatttccctcgttttgccgccatcatcgctttcagattcgccagatggctttgc        <  2:2140138‑M2/100‑61 (MQ=255)
                                                                                            taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCcttgattatttccctcgttttgccgccatcatcgctttcagattcgccagatggctttgc        <  1:1140235‑M2/100‑61 (MQ=255)
                                                                                            taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTg       <  2:688646/100‑1 (MQ=255)
                                                                                              atCAAGGCCGGAAAAGATGCGTCAGCATCTCATCCGGCACTTACTCATTAATGCCCTTCCAGCGGACAGTGGACATAGCTCTG‑CCAATGGCTTTCCt        >  2:791034/1‑97 (MQ=38)
                                                                                              atCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCcttgattatttccctcgttttgccgccatcatcgctttcagattcgccagatggctttgccc      <  2:1391896‑M2/100‑63 (MQ=255)
                                                                                               tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGc    <  2:574652/100‑1 (MQ=255)
                                                                                               tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGc    <  2:225936/100‑1 (MQ=255)
                                                                                               tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGc    <  2:1736215/100‑1 (MQ=255)
                                                                                               tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGc    <  1:969794/100‑1 (MQ=255)
                                                                                                cAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCa   >  2:597925/1‑100 (MQ=255)
                                                                                                 aaGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCaa  >  1:2281396/1‑100 (MQ=255)
                                                                                                  aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCcttgattatttccctcgttttgccgccatcatcgctttcagattcgccagatgtctttgccctttc  <  1:1218837‑M2/100‑67 (MQ=255)
                                                                                                   |                                                                                                  
AGCGCAAAGTGGTCAGCGCCGAAGAACGGATGCAGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAA  >  NC_000913/3962604‑3962800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.