New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4040482 =NA (NA)35 (0.360) 11/166 NT NA intergenic (+59/‑35) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon

AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGT  >  NC_000913/4040401‑4040581
                                                                                 |                                                                                                   
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                   <  2:425378‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                   >  2:1183822‑M2/1‑100 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                   <  1:1489012‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                   <  1:911396‑M2/100‑1 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                   >  1:864604‑M2/1‑100 (MQ=255)
aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT                                                                                   <  2:803548‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  <  1:833624‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  >  2:2738541‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  >  2:1049854‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  <  1:350872‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  >  1:2837254‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  >  1:2639655‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  >  1:2111615‑M2/1‑100 (MQ=255)
 aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGGTC                                                                                  <  2:2241665‑M2/100‑1 (MQ=255)
 aTGAACCGTGAGGCGTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC                                                                                  >  1:2801867‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  1:1993578‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 <  1:115572‑M2/100‑1 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 <  2:90231‑M2/100‑1 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  1:1247455‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  2:2485583‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  2:2457346‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  2:1252297‑M2/1‑100 (MQ=255)
  tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  2:1545555‑M2/1‑100 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                                >  1:815434‑M2/1‑100 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                                >  1:2316959‑M2/1‑100 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                                <  2:674635‑M2/100‑1 (MQ=255)
   gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                                <  2:1614097‑M2/100‑1 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGTGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                               >  2:2181985‑M2/1‑100 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                               <  2:2360081‑M2/100‑1 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                               >  2:1167589‑M2/1‑100 (MQ=255)
    aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA                                                                               <  2:730986‑M2/100‑1 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                              >  2:745346‑M2/1‑100 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                              >  1:1629108‑M2/1‑100 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG                                                                                >  1:914158‑M2/1‑98 (MQ=255)
     aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT                                                                                 >  1:1571045‑M2/1‑97 (MQ=255)
       cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATtt                                                                            >  1:865367‑M2/1‑98 (MQ=255)
           aGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatc                                                                        >  2:2216594‑M2/1‑94 (MQ=255)
                                     gtTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcat                                             <  2:1235239‑M2/100‑34 (MQ=255)
                                                               cAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgt                    <  1:196648‑M2/100‑59 (MQ=255)
                                                                 gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaa                  <  2:673567‑M2/100‑61 (MQ=255)
                                                                  tccgatctagattaaatCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaag                 >  2:378061‑M2/9‑39 (MQ=255)
                                                                  ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaag                 <  1:2181686‑M2/100‑62 (MQ=255)
                                                                   ttccgatctattaaatcagAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagg                >  1:1866932‑M2/10‑38 (MQ=255)
                                                                    tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggt               <  1:2122515‑M2/100‑64 (MQ=255)
                                                                       tACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaag            <  2:2509328‑M2/100‑67 (MQ=255)
                                                                        aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaag           <  2:2240694‑M2/100‑68 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct         <  2:746883‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct         <  1:2674739‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc         <  1:643539‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc         <  1:562298‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc         <  1:50956‑M2/100‑70 (MQ=255)
                                                                          aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagagatcgga         <  1:378059‑M2/100‑70 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctc        <  2:1156008‑M2/100‑71 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct        <  1:2458108‑M2/100‑71 (MQ=255)
                                                                           gATTAAATCAGAACGCAGAAGCGGTCTGATgtaatctgtatcaggctgaaaagcatctcggaatccgccaaaacaccttcggcgttataaggttaagac         <  1:511545‑M2/99‑70 (MQ=255)
                                                                            aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctc       <  2:2401610‑M2/100‑72 (MQ=255)
                                                                            aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggagatcggaa       <  2:1866940‑M2/100‑72 (MQ=255)
                                                                             ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcac      <  2:2780232‑M2/100‑73 (MQ=255)
                                                                              tAAATCAGACCGCAGAAGCAGTCTGATttaatctgtatcaggctgaaaatcctctctcaatccgccaaaacaccttcggcgttataagcttaaccctcac     <  1:616471‑M2/100‑74 (MQ=255)
                                                                              tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac     <  1:2712498‑M2/100‑74 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatttgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg    <  1:1856807‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgcaaatcttctcccaatccgccaaaacagctccggcgttgtaaggttaagcctcac     <  1:6232‑M2/99‑74 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg    <  2:2745856‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg    <  2:931692‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg    <  1:216172‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg    <  2:2184871‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg    <  2:1847078‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg    <  1:462317‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg    <  1:2540572‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg    <  2:208032‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg    <  2:271010‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg    <  1:1813063‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg    <  2:2246423‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg    <  1:2594198‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg    <  2:2793364‑M2/100‑75 (MQ=255)
                                                                               aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctcacatccgccaaaacatcttcggcgttgtaaggttaagcctcaggg    <  2:604204‑M2/100‑75 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctgtcatccgccaaaacatcttcggcgttgtaaggctaagcctcacgg    <  1:2150197‑M2/99‑75 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt   <  2:601923‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt   <  2:1020646‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt   <  2:741075‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg    <  1:1210630‑M2/99‑75 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt   <  1:332835‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg   <  1:2748627‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg   <  2:1630209‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg   <  2:621467‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg   <  2:1117263‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg   <  1:980145‑M2/100‑76 (MQ=255)
                                                                                aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggcagaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg   <  1:1590864‑M2/100‑76 (MQ=255)
                                                                                 aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggtt  <  1:33827‑M2/100‑77 (MQ=255)
                                                                                 aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt  <  1:1297201‑M2/100‑77 (MQ=255)
                                                                                 aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt  <  2:1933108‑M2/100‑77 (MQ=255)
                                                                                 aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt  <  2:1597153‑M2/100‑77 (MQ=255)
                                                                                 aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggt  <  1:852399‑M2/100‑77 (MQ=255)
                                                                                 |                                                                                                   
AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGT  >  NC_000913/4040401‑4040581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.