New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 416834117 (0.160)21 (0.230) 12/158 NT 58.2% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 NA (NA)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu

GATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG  >  NC_000913/4168242‑4168440
                                                                                                   |                                                                                                   
gATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAT                                                                                                     <  2:2203090‑M1/100‑1 (MQ=255)
 aTAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAata                                                                                                    >  1:1664573/1‑100 (MQ=38)
 aTAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAata                                                                                                    <  2:1610501/100‑1 (MQ=38)
  tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAatat                                                                                                   >  2:144643/1‑100 (MQ=38)
  tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAatat                                                                                                   >  1:176766/1‑100 (MQ=38)
   aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATc                                                                                                  <  1:2054315/100‑1 (MQ=35)
   aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATc                                                                                                  <  2:2237700/100‑1 (MQ=35)
   aGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATc                                                                                                  >  2:1739355/1‑100 (MQ=35)
    gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa                                                                                                 <  1:2114517/100‑1 (MQ=35)
    gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa                                                                                                 >  2:1172662/1‑100 (MQ=35)
      aaGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACg                                                                                               >  2:2257684/1‑100 (MQ=33)
       aGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttat                                                                                              <  2:555855‑M1/100‑8 (MQ=255)
       aGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGc                                                                                              >  1:643451/1‑100 (MQ=33)
        gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCa                                                                                             <  1:1126238/100‑1 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  1:2368182/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  1:218514/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  1:946397/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  1:2152038/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  2:977225/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  1:1882713/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  1:1436686/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAc                                                                                           >  2:2443183/1‑100 (MQ=32)
          gAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCGCACCCTACACGAACATATAACGc                                                                                              >  1:1395476/1‑97 (MQ=255)
           aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGcgttg                                                                                          >  1:1396761/1‑96 (MQ=17)
            aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgc                                                                                         >  1:760412‑M1/1‑88 (MQ=255)
            aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgc                                                                                         >  2:328279/1‑100 (MQ=31)
             aaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcgcg                                                                                        <  1:2647298/100‑1 (MQ=11)
                   ggCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatat                                                                                   <  2:1396763‑M1/100‑20 (MQ=255)
                   ggCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCGTTGCGTGATat                                                                                  <  2:1250683/100‑2 (MQ=1)
                     cGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattt                                                                                 <  2:752142‑M1/100‑22 (MQ=255)
                        ttACGCGGTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAAatcacgcgttgcgtgatattttcg                                                                              <  2:1473455‑M1/100‑25 (MQ=255)
                         tACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTAGTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcaacgcgtgataag                                                                            <  1:256682‑M1/100‑26 (MQ=255)
                             cgTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcg                                                                        <  2:2778978‑M1/100‑30 (MQ=255)
                               ttGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtg                                                                      <  2:2190558‑M1/100‑32 (MQ=255)
                               ttGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtg                                                                      <  2:760414‑M1/100‑32 (MQ=255)
                               ttGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtg                                                                      <  2:1354917‑M1/100‑32 (MQ=255)
                                  ggAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtag                                                                   <  2:2083531‑M1/100‑35 (MQ=255)
                                  ggAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtag                                                                   <  1:1600580‑M1/100‑35 (MQ=255)
                                  ggAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtag                                                                   <  1:2597590‑M1/100‑35 (MQ=255)
                                    aGTGAGGCTGAAGAGAATACGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagg                                                                  <  1:1407960‑M1/99‑36 (MQ=255)
                                    aGTGAGGCTGAAGAGAATAAGGTCGTTCGCTCTCTATGAATGAAAGCTCACCCGACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtaggg                                                                 <  1:1967327‑M1/100‑37 (MQ=255)
                                    aGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtaggg                                                                 <  2:1705084‑M1/100‑37 (MQ=255)
                                    aGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtaggg                                                                 <  2:500318‑M1/100‑37 (MQ=255)
                                     gtgagtgttaaGAGAATAAGGACGTTCGTTTTCTATTAATGAAAGCTTACCCTACACGAAATTATCACGCAACGCGTGATAAGCAATTTTCgtg                                                                      <  1:1154874/85‑1 (MQ=1)
                                      tGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtg                                                               <  2:641994‑M1/100‑39 (MQ=255)
                                      tGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtg                                                               <  1:1539524‑M1/100‑39 (MQ=255)
                                         ggCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagc                                                            <  2:969812‑M1/100‑42 (MQ=255)
                                                           cGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcg                                          <  2:54177‑M1/100‑60 (MQ=255)
                                                                                          acacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccca           <  2:461955‑M1/100‑91 (MQ=255)
                                                                                          acacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccca           <  2:1160967‑M1/100‑91 (MQ=255)
                                                                                           cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa          >  2:1486111‑M1/1‑9 (MQ=255)
                                                                                           cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa          >  2:1908746‑M1/1‑9 (MQ=255)
                                                                                           cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa          >  1:282384‑M1/1‑9 (MQ=255)
                                                                                           cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa          >  1:1959256‑M1/1‑9 (MQ=255)
                                                                                           cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa          >  1:213306‑M1/1‑9 (MQ=255)
                                                                                           cacGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaa          <  1:2241304‑M1/100‑92 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        >  1:1724068‑M1/1‑7 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        >  2:2613448‑M1/1‑7 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        <  2:1634332‑M1/100‑94 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        <  2:280281‑M1/100‑94 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        >  2:2887772‑M1/1‑7 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        <  1:882577‑M1/100‑94 (MQ=255)
                                                                                             cGAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacg        <  1:299215‑M1/100‑94 (MQ=255)
                                                                                              gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc       >  2:1158570‑M1/1‑6 (MQ=255)
                                                                                              gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc       >  2:2772436‑M1/1‑6 (MQ=255)
                                                                                              gAAAATtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgc       >  1:2636746‑M1/1‑6 (MQ=255)
                                                                                              gAAAATtgcttatcacgcgttgcgtgatattttcgtgcagggtgagctttcattaattgaaagcgaccggccttattctcttcagcctcactccccacg        <  1:1584515‑M1/99‑94 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      <  2:2659706‑M1/100‑96 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      <  2:1524470‑M1/100‑96 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      >  2:1221294‑M1/1‑5 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      <  1:8516‑M1/100‑96 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      <  1:2148661‑M1/100‑96 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      >  1:1323554‑M1/1‑5 (MQ=255)
                                                                                               aaaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcg      >  1:1153688‑M1/1‑5 (MQ=255)
                                                                                                aaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgt     <  2:1416622‑M1/100‑97 (MQ=255)
                                                                                                aaaTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgt     <  1:2812420‑M1/100‑97 (MQ=255)
                                                                                                  aTtgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaa   <  2:914753‑M1/100‑99 (MQ=255)
                                                                                                   ttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaa  >  1:481382‑M1/1‑1 (MQ=255)
                                                                                                   ttgcttatcacgcgttgcgtgatattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaa  <  1:425102‑M1/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
GATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGG  >  NC_000913/4168242‑4168440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.