New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4168377 =	2 (0.020)	5 (0.050)	3/168	NT	72.6%	noncoding (6/76 nt)	gltT	tRNA‑Glu
	?	NC_000913	4209763 =	NA (NA)					intergenic (+75/‑11)	rrsE/gltV	16S ribosomal RNA of rrnE operon/tRNA‑Glu

AGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGC  >  NC_000913/4168278‑4168452                                                                                                    |                                                                             caaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgc                                                                              <  2:2630899‑M1/1‑1 (MQ=255)  aaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgacagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCt                                                                             <  1:619131‑M1/2‑1 (MQ=255)  aaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgc                                                                              >  1:1153947‑M1/99‑99 (MQ=255)   aaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtgtcagtctgCt                                                                             <  1:613378‑M1/2‑1 (MQ=255)   aaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCtt                                                                            <  2:852715‑M1/3‑1 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                          >  2:1120382‑M1/96‑100 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                          >  2:55150‑M1/96‑100 (MQ=255)     ccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctagacgaaggggacgtatcagtctgCTTCg                                                                          >  2:55165‑M1/96‑100 (MQ=255)                                                                    acacAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACg          >  2:884623/4‑100 (MQ=1)                                                                    aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATTCGAA‑CCCCtgttaccgc          <  1:2615194/100‑9 (MQ=1)                                                                         tctagacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACt     <  1:540984‑M1/73‑1 (MQ=255)                                                                         tctagacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACt     <  2:1307844‑M1/73‑1 (MQ=255)                                                                           tagacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTg   <  1:2189141‑M1/75‑1 (MQ=255)                                                                            agacgaaggggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGc  <  1:987515‑M1/76‑1 (MQ=255)                                                                            agacgaaagggacgtatcagtctgCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGc  <  2:1526458‑M1/76‑1 (MQ=255)                                                                                                    |                                                                             AGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGC  >  NC_000913/4168278‑4168452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.