New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3277819 =NA (NA)5 (0.050) 4/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 143 total aligned reads displayed.

GGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCAT  >  NC_000913/3277745‑3277942
                                                                                                   |                                                                                                  
ctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcg                                                                                                    >  2:2284689‑M2/100‑100 (MQ=255)
 gACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGG                                                                                                   >  1:1516830‑M2/1‑100 (MQ=255)
  aCATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGG                                                                                                  <  2:931640‑M2/100‑1 (MQ=255)
    ggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcGGGCa                                                                                                <  1:2152236‑M2/5‑1 (MQ=255)
    ggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcGGGCa                                                                                                <  1:903419‑M2/5‑1 (MQ=255)
      cctcctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATc                                                                                              <  1:1150324/100‑1 (MQ=255)
      cctcctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATc                                                                                              >  2:1061681/1‑100 (MQ=255)
      cctcctGCCGACTGCGAAACCCTCACCCTCGAAACAGAAGAAACCCCTTGATGGTGTTCACATTTCCCGCCGATCGCTTTCTTGTTGACCACCGGGCa                                                                                                <  1:2609724/98‑1 (MQ=255)
      atagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATc                                                                                              >  1:2114062‑M1/69‑100 (MQ=255)
        agcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCCTTCGTGTTGACCAGCGGGCATc                                                                                              >  1:1371559‑M1/67‑98 (MQ=255)
         cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                                           >  2:1090010/1‑100 (MQ=255)
           tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtc                                                                                         <  1:176800/100‑1 (MQ=255)
            gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGCAACCCATTGATGGTGATCACAATGCCCGCCGAACGCATCCGTCTTGACCAGCGGGACTCCTTtct                                                                                        >  1:175112/1‑100 (MQ=255)
            gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTGCACAAAGCCCGCCGAACGCACTGGTGGTGACCCGCGCGCTTCCCTtct                                                                                        >  1:2456150/1‑100 (MQ=255)
             ccGACTGTGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATTGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                       <  1:47969/100‑1 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                       <  2:1604308/100‑1 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                       <  1:225188/100‑1 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                       <  2:2803147/100‑1 (MQ=255)
              gaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCa                                                                                      >  1:1830817‑M1/61‑100 (MQ=255)
               gACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCAc                                                                                     <  2:543487/100‑1 (MQ=255)
               gACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGAATCCTTTCTCAc                                                                                     >  1:2169241/1‑100 (MQ=255)
               aaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCAc                                                                                     >  1:1170083‑M1/60‑100 (MQ=255)
                 cTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTc                                                                                   <  2:1987537/100‑1 (MQ=255)
                 cTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAAAGCATTCGTGTTGACCAACGGGCATCCTTTCTCACt                                                                                    >  1:2488738/1‑99 (MQ=255)
                  tGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcc                                                                                  <  2:469946/100‑1 (MQ=255)
                   gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTccc                                                                                 >  2:1545801/1‑100 (MQ=255)
                     gAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCCTTCTCACTCCCCg                                                                               <  1:1802587/100‑1 (MQ=255)
                       aaCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAc                                                                             <  2:1840739/100‑1 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                                           <  2:2811541/100‑1 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                          <  1:1999682/100‑1 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                          <  1:371872/100‑1 (MQ=255)
                            tCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGaa                                                                        <  2:2563476/100‑1 (MQ=255)
                            tCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGaa                                                                        <  1:1898510/100‑1 (MQ=255)
                             cACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCAGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAAt                                                                       >  1:1934062/1‑100 (MQ=255)
                              aCCCGAGAAACAGAAGAAACCCATTGCTGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCATTTCTCACTCCCCGACCAGAAta                                                                      >  1:721880/1‑99 (MQ=255)
                              aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttctt                                                                      <  1:2431122‑M2/100‑28 (MQ=255)
                              aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGaa                                                                        >  1:1931494/1‑98 (MQ=255)
                              aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATc                                                                      <  1:2733718/100‑1 (MQ=255)
                               cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                                                     >  2:1706606/1‑100 (MQ=255)
                                  gagaAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACtt                                                                  >  2:2264250/1‑100 (MQ=255)
                                      agcAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAc                                                              >  1:1412043/3‑100 (MQ=255)
                                      aaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAc                                                              >  1:2370400/1‑100 (MQ=255)
                                       aCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAcc                                                             >  2:2693487/1‑100 (MQ=255)
                                        cAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAccc                                                            <  1:962211/100‑1 (MQ=255)
                                        cAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAccc                                                            >  1:605881/1‑100 (MQ=255)
                                        cAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAccc                                                            >  2:33896/1‑100 (MQ=255)
                                          gaagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGACTCACTTCAACCCCa                                                          >  1:1438309/1‑100 (MQ=255)
                                             gaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGcc                                                       <  1:1325357/100‑1 (MQ=255)
                                                aCCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCttt                                                    >  1:1029100/1‑100 (MQ=255)
                                                 cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTc                                                   >  2:800120/1‑100 (MQ=255)
                                                   cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                                                 <  2:1792883/100‑1 (MQ=255)
                                                    aTTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTGGACCAGCGGGCATCCTTTCTCACTCCCCTACCAGAATCACTTCAACACCAGCCTTTCGCa                                                >  2:696878/1‑100 (MQ=255)
                                                     ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAg                                               <  1:2568721/100‑1 (MQ=255)
                                                         tGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCt                                           >  1:1035079/1‑100 (MQ=255)
                                                         tGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCt                                           <  1:2574372/100‑1 (MQ=255)
                                                              gaaaggatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg                                      >  2:2686135‑M2/38‑100 (MQ=255)
                                                               tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg                                     >  2:397637/1‑100 (MQ=255)
                                                               tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg                                     >  1:1873934/1‑100 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCTTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                    <  1:2042998/100‑1 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                    >  2:2308058/1‑100 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                    <  2:1049071/100‑1 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                    >  1:352303/1‑100 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                    <  1:397635/100‑1 (MQ=255)
                                                                 acaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcagga                                   <  1:880059‑M2/100‑63 (MQ=255)
                                                                 acaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcagga                                   <  2:1397245‑M2/100‑63 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcaggag                                  <  2:141327‑M2/100‑64 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcaggag                                  <  1:2589307‑M2/100‑64 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcaggag                                  <  2:724007‑M2/100‑64 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcaggag                                  <  2:2633607‑M2/100‑64 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcagg                                    <  1:2218861‑M2/98‑62 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTa                                  >  2:2104447/1‑100 (MQ=255)
                                                                   gatgcccgctggtcaacacgaaggcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCt                                   >  1:1371559‑M2/33‑98 (MQ=255)
                                                                   aaTGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt                                 >  2:1722247/1‑100 (MQ=255)
                                                                     tgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATcc                               >  1:1090008‑M1/6‑100 (MQ=255)
                                                                     tgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATcc                               <  1:2152236‑M1/95‑1 (MQ=255)
                                                                       cccGCCGAACGCATTCGTGTTGACCAGCGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcaggaggatgt                             <  1:485250‑M2/100‑69 (MQ=255)
                                                                        ccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCa                            >  1:476203‑M1/3‑100 (MQ=255)
                                                                         cGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAg                           >  2:2284689‑M1/2‑100 (MQ=255)
                                                                           CCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGa                         <  1:325033‑M1/100‑1 (MQ=255)
                                                                             gAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAAt                       <  1:1590206/100‑1 (MQ=255)
                                                                             gAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAAt                       >  2:1221532/1‑100 (MQ=255)
                                                                                 gCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCTGCAGGAATGCCt                   <  2:1911697/100‑1 (MQ=255)
                                                                                    ttCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtca                <  2:2665908/100‑1 (MQ=255)
                                                                                    tgcgggtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAGCCGCAGGAATGCCTtca                <  1:2307642/95‑1 (MQ=255)
                                                                                     tCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcat               <  2:2160568/100‑1 (MQ=255)
                                                                                      cGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcatc              <  2:2321686/100‑1 (MQ=255)
                                                                                       gtgtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcatca             <  2:2356911/100‑1 (MQ=255)
                                                                                         gtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaac           <  2:605882/100‑1 (MQ=255)
                                                                                         gtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaac           >  2:1917557/1‑100 (MQ=255)
                                                                                           tGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaacaa         <  2:1430640/100‑1 (MQ=255)
                                                                                           tGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaacaa         >  1:277090/1‑100 (MQ=255)
                                                                                            gACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAAt        >  2:2513353/1‑100 (MQ=255)
                                                                                            gACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAAt        >  2:2022775/1‑100 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCCGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGa      >  1:1203351/1‑100 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGa      >  2:1149495/1‑100 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGa      >  1:1273757/1‑100 (MQ=255)
                                                                                               cAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGAt     >  2:2632337/1‑100 (MQ=255)
                                                                                                  cGGGCattgtgaacaccatcaatgggtttcttctgtttctcgggtgagggtttcccagtcggcaggaggatgtcctctttttaacattttgctgaatacg  <  2:1455402‑M2/100‑96 (MQ=255)
                                                                                                  cGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCAt  <  2:1659725‑M2/99‑1 (MQ=255)
                                                                                                  cGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCAt  >  1:1659720‑M2/2‑100 (MQ=255)
                                                                                                   |                                                                                                  
GGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCAT  >  NC_000913/3277745‑3277942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.