New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4035360NA (NA)16 (0.170) 8/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4035285‑4035483
                                                                                                   |                                                                                                   
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  2:926860‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  2:1598926‑M2/1‑100 (MQ=255)
                                                          gTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggagtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttct                                           <  1:1613711‑M2/100‑59 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttc                               <  2:271704‑M2/100‑71 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttc                               <  1:1155664‑M2/100‑71 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccgg                                    <  1:1637332‑M2/95‑66 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                             <  1:1084093‑M2/100‑73 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                             <  1:449428‑M2/100‑73 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                             <  2:1430531‑M2/100‑73 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                             <  1:1669244‑M2/100‑73 (MQ=255)
                                                                        ccGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctc                             <  2:785970‑M2/100‑73 (MQ=255)
                                                                         cgcgCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctca                            <  1:1132920‑M2/100‑74 (MQ=255)
                                                                         cgcgCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctca                            <  2:1683695‑M2/100‑74 (MQ=255)
                                                                          gcgcCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatctttgctttctctgccggagttctc                             <  2:1551935‑M2/98‑73 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                          <  2:1618830‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcgggatgggcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcag                           <  1:1907674‑M2/99‑75 (MQ=255)
                                                                             ccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggag                        <  2:1682912‑M2/100‑78 (MQ=255)
                                                                               gcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaa                      <  2:1058251‑M2/100‑80 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggc       <  2:2810825‑M2/100‑95 (MQ=255)
                                                                                                cggcgcggggtgtgcataataggccttcccgctacagagtcaagcatttatttttgctttctctgccggagttcgcaggagaaccccgctgacccggcgg     <  1:2318060‑M2/100‑97 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     <  1:1171641‑M2/100‑97 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     >  1:823831‑M2/1‑4 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcgagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     <  1:1691582‑M2/99‑97 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc    >  2:2856877‑M2/1‑3 (MQ=255)
                                                                                                 ggcgcgggatgtgcataatacgccttacagctacagagtcaagcagttatttgtgctttctctgccggagttctcaggagaaccccgatgacccggcggc    <  1:758417‑M2/100‑98 (MQ=255)
                                                                                                  gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg   >  2:248632‑M2/1‑2 (MQ=255)
                                                                                                  gcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcg   >  2:1831661‑M2/1‑2 (MQ=255)
                                                                                                   cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgt  >  2:2113517‑M2/1‑1 (MQ=255)
                                                                                                   cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgt  <  2:1046294‑M2/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4035285‑4035483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.