New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4040481NA (NA)64 (0.660) 13/166 NT 100% intergenic (+58/‑36) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 = 4040505 0 (0.000)intergenic (+82/‑12) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon

ACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC  >  NC_000913/4040406‑4040604
                                                                                                   |                                                                                                   
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                                                     >  1:1629108‑M2/1‑100 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                                                     >  2:745346‑M2/1‑100 (MQ=255)
  cGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATtt                                                                                                   >  1:865367‑M2/1‑98 (MQ=255)
      aGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatc                                                                                               >  2:2216594‑M2/1‑94 (MQ=255)
                                gtTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcat                                                                    <  2:1235239‑M2/100‑34 (MQ=255)
                                                          cAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgt                                           <  1:196648‑M2/100‑59 (MQ=255)
                                                            gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaa                                         <  2:673567‑M2/100‑61 (MQ=255)
                                                             tccgatctagattaaatCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaag                                        >  2:378061‑M2/9‑39 (MQ=255)
                                                             ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaag                                        <  1:2181686‑M2/100‑62 (MQ=255)
                                                              ttccgatctattaaatcagAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagg                                       >  1:1866932‑M2/10‑38 (MQ=255)
                                                               tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggt                                      <  1:2122515‑M2/100‑64 (MQ=255)
                                                                  tACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaag                                   <  2:2509328‑M2/100‑67 (MQ=255)
                                                                   aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaag                                  <  2:2240694‑M2/100‑68 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct                                <  1:2674739‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct                                <  2:746883‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc                                <  1:562298‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc                                <  1:50956‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc                                <  1:643539‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagagatcgga                                <  1:378059‑M2/100‑70 (MQ=255)
                                                                      gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctc                               <  2:1156008‑M2/100‑71 (MQ=255)
                                                                      gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct                               <  1:2458108‑M2/100‑71 (MQ=255)
                                                                      gATTAAATCAGAACGCAGAAGCGGTCTGATgtaatctgtatcaggctgaaaagcatctcggaatccgccaaaacaccttcggcgttataaggttaagac                                <  1:511545‑M2/99‑70 (MQ=255)
                                                                       aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctc                              <  2:2401610‑M2/100‑72 (MQ=255)
                                                                       aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggagatcggaa                              <  2:1866940‑M2/100‑72 (MQ=255)
                                                                        ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcac                             <  2:2780232‑M2/100‑73 (MQ=255)
                                                                         tAAATCAGACCGCAGAAGCAGTCTGATttaatctgtatcaggctgaaaatcctctctcaatccgccaaaacaccttcggcgttataagcttaaccctcac                            <  1:616471‑M2/100‑74 (MQ=255)
                                                                         tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac                            <  1:2712498‑M2/100‑74 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatttgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg                           <  1:1856807‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgcaaatcttctcccaatccgccaaaacagctccggcgttgtaaggttaagcctcac                            <  1:6232‑M2/99‑74 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg                           <  2:931692‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg                           <  2:2745856‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg                           <  1:216172‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  2:1847078‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  1:462317‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  2:2184871‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  1:2540572‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg                           <  2:208032‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg                           <  2:271010‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  1:2594198‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  2:2793364‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  2:2246423‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  1:1813063‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctcacatccgccaaaacatcttcggcgttgtaaggttaagcctcaggg                           <  2:604204‑M2/100‑75 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctgtcatccgccaaaacatcttcggcgttgtaaggctaagcctcacgg                           <  1:2150197‑M2/99‑75 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  2:741075‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  2:1020646‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  2:601923‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg                           <  1:1210630‑M2/99‑75 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt                          <  1:332835‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                          <  1:2748627‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  2:1630209‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  2:621467‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  2:1117263‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  1:980145‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggcagaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  1:1590864‑M2/100‑76 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggtt                         <  1:33827‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt                         <  1:1297201‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt                         <  2:1597153‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt                         <  2:1933108‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggt                         <  1:852399‑M2/100‑77 (MQ=255)
                                                                             tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttc                        <  2:507392‑M2/100‑78 (MQ=255)
                                                                             tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagctttggcgttgtaaggttaagcctcacggtt                        <  1:227513‑M2/100‑78 (MQ=255)
                                                                              cAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttca                       <  2:1397397‑M2/100‑79 (MQ=255)
                                                                               aGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttca                      <  1:2635945‑M2/100‑80 (MQ=255)
                                                                               aGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttca                      <  2:531978‑M2/100‑80 (MQ=255)
                                                                                  aCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcatta                   <  1:989241‑M2/100‑83 (MQ=255)
                                                                                  aCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcatta                   <  2:1802284‑M2/100‑83 (MQ=255)
                                                                                         aGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccgg            >  2:2712508‑M2/1‑11 (MQ=255)
                                                                                            ggTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggtta         >  2:2635956‑M2/1‑8 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  2:350328‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       <  2:148450‑M2/100‑95 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       <  2:2396492‑M2/100‑95 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  2:1737692‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  2:1936699‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttag        <  2:2242849‑M2/99‑94 (MQ=255)
                                                                                               cTGGTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcgttagtaccggttagc       <  1:1178185‑M2/99‑95 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      <  2:986015‑M2/100‑96 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      >  1:1323899‑M2/1‑5 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      <  2:2779817‑M2/100‑96 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      <  2:2467172‑M2/100‑96 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       <  2:2547708‑M2/99‑95 (MQ=255)
                                                                                                tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc     >  1:2848974‑M2/1‑4 (MQ=255)
                                                                                                tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc     <  1:1981302‑M2/100‑97 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  2:1673503‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  2:977046‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    >  2:1493311‑M2/1‑3 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  2:1287526‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  2:115382‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttacctca    <  1:2257607‑M2/100‑98 (MQ=255)
                                                                                                  aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa   >  2:924527‑M2/1‑2 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  1:1805037‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  2:818646‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  2:1871354‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  2:481360‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  2:2619188‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtacaggttagctcaac  >  1:1994083‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
ACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC  >  NC_000913/4040406‑4040604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.