BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	361887 =	NA (NA)	12 (0.130)	9/164	NT	NA	noncoding (5/34 nt)	REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	361917 =	NA (NA)	12 (0.130)	9/164	NT	NA	intergenic (‑57/+9)	lacA/lacY	thiogalactoside acetyltransferase/lactose permease

Only 100 of 186 total aligned reads displayed.

ATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCC  >  NC_000913/361818‑362016

aTAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACa                                                                                                     <  1:2905689/100‑1 (MQ=255)

   gCTTGCCTGCTCTTATTCTTCCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACatt                                                                                                   >  1:257038/1‑99 (MQ=255)

   cttagcggccccggcccgctttccctgctgcgtcgtcaggtgaatgaagtcgcttaagcaatcaatgtcggataaggcgctcgcgccgcatccgacattg                                                                                                  <  2:163758‑M2/4‑1 (MQ=255)

    cTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGAGATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACattga                                                                                                 <  1:1217990/100‑1 (MQ=255)

     tagcggccccggcccgctttccctgctgcgtcgtcaggtgaatgaagtcgcttaagcaatcaatGTCTGATAAGGCGCTCGCGCCGCATCCGACattgat                                                                                                >  1:418908‑M1/65‑100 (MQ=255)

      tGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACattgatt                                                                                               >  1:2097373/1‑100 (MQ=255)

       gCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACattgattg                                                                                              <  2:1171149/100‑1 (MQ=255)

          tGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCtt                                                                                           <  1:2856382/100‑1 (MQ=255)

          tGCTCTTATTCTTTCGGTCATTGGCATGTTAAATGCGATCACTCCGTTATGATATGTTGATCGGATAAGGCGCTCGCGCCGCATCCGACattg                                                                                                  >  1:1989602/1‑93 (MQ=255)

           gCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTa                                                                                          >  2:1149628/1‑100 (MQ=255)

               ttATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGca                                                                                      >  2:123525/1‑99 (MQ=255)

               ttATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCg                                                                                      >  2:2729187/1‑100 (MQ=255)

                tATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTCTGATATGTTGGTCGGATAAGGCGCTCCCGCCGCATCAGACATTGATTGCATAAGCGa                                                                                     >  1:2622543/1‑100 (MQ=39)

                tATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGa                                                                                     >  2:1788868/1‑100 (MQ=255)

                tATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGa                                                                                     >  2:2065281/1‑100 (MQ=255)

                    cTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACttc                                                                                 >  1:1680924/1‑100 (MQ=255)

                       tCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGTGCTCGCGCCGGATCCGACATTGATTGCTTAAGCGACttcact                                                                              <  2:1964317/100‑3 (MQ=255)

                        cGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACttcattc                                                                             >  2:1692506/1‑100 (MQ=255)

                        cGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACttcattc                                                                             >  2:1297618/1‑100 (MQ=255)

                        cGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACttcattc                                                                             >  1:1328200/1‑100 (MQ=255)

                        cGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACttcattc                                                                             <  2:2666978/100‑1 (MQ=255)

                        cGGTCATTGACATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACttcattc                                                                             <  2:2399309/100‑1 (MQ=255)

                          gTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCAc                                                                           >  2:907134/1‑100 (MQ=255)

                          gTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCAc                                                                           >  2:318308/1‑100 (MQ=255)

                           tCATTGTCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCAcc                                                                          <  2:963850/100‑1 (MQ=255)

                           tCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCAcc                                                                          <  2:2355635/100‑1 (MQ=255)

                            cATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCt                                                                         >  2:465220/1‑100 (MQ=255)

                              ttGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTga                                                                       <  2:2472365/100‑1 (MQ=255)

                                ggCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTgacg                                                                     >  2:53864/1‑100 (MQ=255)

                                ggCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTgacg                                                                     >  2:2267544/1‑100 (MQ=255)

                                  cATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTgacgac                                                                   >  1:854626/1‑100 (MQ=255)

                                     gTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCAGTCACCTGACGACgca                                                                >  2:2857910/1‑100 (MQ=255)

                                       tCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACgcagc                                                              <  2:1894226/100‑1 (MQ=255)

                                       tCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACgcagc                                                              <  1:2307809/100‑1 (MQ=255)

                                           tGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAggg                                                          <  1:559188/100‑1 (MQ=255)

                                             cGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGGCATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGaa                                                        >  1:1845808/1‑100 (MQ=255)

                                             cGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGaa                                                        >  2:2494503/1‑100 (MQ=255)

                                             cGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGaa                                                        >  1:1541015/1‑100 (MQ=255)

                                             cGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGaa                                                        >  2:774522/1‑100 (MQ=255)

                                             cGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGaa                                                        <  1:1297616/100‑1 (MQ=255)

                                               aTCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGaaan                                                      <  1:108785/100‑2 (MQ=255)

                                                  aCTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgg                                                   >  2:1886460/1‑100 (MQ=255)

                                                   cTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCggg                                                  <  2:1724195/100‑1 (MQ=255)

                                                   cTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgg                                                   >  2:1732939/1‑99 (MQ=255)

                                                       gTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccgg                                              <  1:2857900/100‑1 (MQ=255)

                                                       gTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccgg                                              >  2:2195800/1‑100 (MQ=255)

                                                        ttATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccggg                                             <  2:2613428/100‑1 (MQ=255)

                                                        ttATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccggg                                             <  1:1985633/100‑1 (MQ=255)

                                                         tATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccgggg                                            <  1:472715/100‑1 (MQ=255)

                                                          aTGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccggggc                                           <  2:2016852/100‑1 (MQ=255)

                                                           tGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccggggcc                                          <  2:1329845/100‑1 (MQ=255)

                                                           tGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCgggccggggcc                                          <  2:1571051/100‑1 (MQ=255)

                                                             atatGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGc                                        <  1:1449575/100‑1 (MQ=255)

                                                             atatGTTGGTCGGATAAGGCGCTCGCGCCGCATCCAACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGc                                        >  2:176742/1‑100 (MQ=255)

                                                              tatGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCt                                       <  2:1265020/100‑1 (MQ=255)

                                                              tatGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCt                                       >  1:1314000/1‑100 (MQ=255)

                                                               atcaatGTCGGATGCGGCGCGAGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTa                                      <  2:807082‑M1/94‑1 (MQ=255)

                                                                 gTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTACTTAAGCGACTTCATTCACATGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAg                                    >  1:1589511/1‑100 (MQ=255)

                                                                  ttGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGc                                   <  1:914898/100‑1 (MQ=255)

                                                                   tGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCg                                  >  2:1929648/1‑100 (MQ=255)

                                                                   atgtcggatgcggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCg                                  >  1:2106778‑M2/33‑100 (MQ=255)

                                                                   atGTCGGATGCGGCGCGAGCGCCTTATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCg                                  <  2:1845069‑M1/98‑1 (MQ=255)

                                                                    ggTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGt                                 >  2:322941/1‑100 (MQ=255)

                                                                    ggTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGt                                 <  2:2248169/100‑1 (MQ=255)

                                                                    ggTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTAACGACGCAGGAGGGAAAGCGGGCCGGGGCCGCTAAGCGt                                 >  1:2041816/1‑100 (MQ=255)

                                                                     gtcggatgcggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTg                                >  1:2152388‑M2/31‑100 (MQ=255)

                                                                     gtcggatgcggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTg                                >  2:2836645‑M2/31‑100 (MQ=255)

                                                                     gtcggatgcggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTg                                >  2:822282‑M2/31‑100 (MQ=255)

                                                                     GTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTg                                >  2:50173‑M1/1‑100 (MQ=255)

                                                                     GTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTg                                >  2:120020‑M1/1‑100 (MQ=255)

                                                                      TCGGATGCGGCGCGAGCGCCTTATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGa                               <  1:1484340‑M1/100‑1 (MQ=255)

                                                                       CGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCCGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGaa                              <  2:1037579‑M1/100‑1 (MQ=255)

                                                                       CGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGa                               >  2:1408765‑M1/1‑99 (MQ=255)

                                                                        gtatgcggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAac                             >  2:1973227‑M2/28‑100 (MQ=255)

                                                                        GGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAac                             >  1:2206749‑M1/1‑100 (MQ=255)

                                                                         gatgcggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAaca                            >  2:781019‑M2/27‑100 (MQ=255)

                                                                         GATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCCGGGAAAGCGGGCAGGGGCAGGTAAGCGTGAaca                            <  1:2377872‑M1/100‑1 (MQ=255)

                                                                             aGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACgg                         >  1:2728310/1‑99 (MQ=255)

                                                                             aGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGa                        <  1:944006/100‑1 (MQ=255)

                                                                             aGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTAACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGa                        >  2:703077/1‑100 (MQ=255)

                                                                              ggcgcgagcgccttatccgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGaa                       <  1:781017‑M2/79‑1 (MQ=255)

                                                                              ggCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGaa                       >  1:106848/1‑100 (MQ=255)

                                                                                cgcTCGCGGCGCATCCGACATCGATTGCTTGAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACgg                         <  1:2590009/96‑1 (MQ=255)

                                                                                cgcTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAAt                     <  1:534126/100‑1 (MQ=255)

                                                                                cgcTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAAt                     >  2:1626831/1‑100 (MQ=255)

                                                                                cgcTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAAt                     >  2:631704/1‑100 (MQ=255)

                                                                                   tCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTaa                  <  1:767027/100‑1 (MQ=255)

                                                                                     gcgcCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAgg                <  2:1314002/100‑1 (MQ=255)

                                                                                     gcgcCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAgg                <  2:1469070/100‑1 (MQ=255)

                                                                                     gcgcCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAgg                <  1:318306/100‑1 (MQ=255)

                                                                                         cgcATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGaa            >  2:1054276/1‑100 (MQ=255)

                                                                                          gcATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAg           <  1:2267534/100‑1 (MQ=255)

                                                                                           cATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGc          >  2:2192718/1‑100 (MQ=255)

                                                                                               cgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAg      <  1:1636088‑M2/96‑1 (MQ=255)

                                                                                               cgacATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAg      <  1:1781162‑M2/96‑1 (MQ=255)

                                                                                                 acATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAgcg    <  2:1312045‑M2/98‑1 (MQ=255)

                                                                                                  cATTGNTTGCTTAAGCGACTTCATCCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAgcg    <  2:2297497‑M2/98‑1 (MQ=255)

                                                                                                  cATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAgcgc   >  2:872033‑M2/2‑100 (MQ=255)

                                                                                                   attgattgCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGcc  <  1:434157/100‑1 (MQ=255)

                                                                                                   attgattgCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGcc  <  2:905728/100‑1 (MQ=255)

ATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACATTGATTGCTTAAGCGACTTCATTCACCTGACGACGCAGCAGGGAAAGCGGGCCGGGGCCGCTAAGCGTGAACACGGAAATTAAGGTGAAGCCCAGCGCC  >  NC_000913/361818‑362016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.