| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1269130 = | NA (NA) | 7 (0.070) | 5/166 | NT | 16.2% | intergenic (+111/+38) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | NC_000913 | 1269154 = | 39 (0.380) | intergenic (+135/+14) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
GCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCA > NC_000913/1269055‑1269253 | gCGTTAAGACTTTTTTCCTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAC > 2:1546573‑M1/1‑100 (MQ=255)gCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAC > 1:2405837‑M1/1‑100 (MQ=255)accgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 2:881176‑M2/100‑100 (MQ=255)accgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc < 1:1169944‑M2/1‑1 (MQ=255) ctgatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcn < 2:1361316‑M2/2‑2 (MQ=255) ccgatcctggcgggaattattaccgcagcgcttatcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatagcaatatgcg > 1:1912536‑M2/99‑100 (MQ=255) cGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG > 2:570934‑M1/1‑100 (MQ=255) cGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG > 2:280719‑M1/1‑100 (MQ=255) cGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCCGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACG > 1:2783340‑M1/1‑100 (MQ=255) gTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGC > 2:1550895‑M1/1‑100 (MQ=255) cgagcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:816494‑M2/3‑1 (MQ=255) ntaAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGAATATTGCCATCACGGCAGCCTGACGCC > 2:400464‑M1/2‑100 (MQ=255) natcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgag > 1:1361314‑M2/97‑98 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtgtcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:1334116‑M2/4‑1 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc > 2:1496627‑M2/97‑100 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:2502109‑M2/4‑1 (MQ=255) gatcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 2:1715738‑M2/4‑1 (MQ=255) tAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCC < 1:1932755‑M1/100‑1 (MQ=255) tAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCC < 2:963225‑M1/100‑1 (MQ=255) tAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCC > 2:351147‑M1/1‑100 (MQ=255) atcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGccc < 1:1567521‑M2/5‑1 (MQ=255) tcctggcgggaattattaccgccgcgattgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccctgattgcaatatgCcccc > 2:1766093‑M2/95‑99 (MQ=255) tcctggcgggaattattaccgcagcgattgtcagctggtggcgtaaccgggagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:317879‑M2/4‑1 (MQ=255) aGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGt < 2:2735091/100‑1 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGtt > 2:293062/1‑100 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGttt < 2:1620428/100‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGtttt > 2:35316/1‑100 (MQ=255) ttttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCTGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGttt < 1:663070/98‑1 (MQ=255) tttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCa < 2:766396/100‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAc < 2:1579038/100‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCCGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAc < 2:2783350/100‑1 (MQ=255) tttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCAcc < 1:771696/100‑1 (MQ=255) tCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCtt < 1:1027245/100‑1 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACt > 2:1661206/1‑100 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACt < 2:1037334/100‑1 (MQ=255) gggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACtt > 1:1049509/1‑100 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTc > 1:1308591/1‑100 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTc > 2:2700545/1‑100 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTc > 2:511821/1‑100 (MQ=255) gTGCCGGATACAAAAAAGGCCGCATGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTcc < 1:1112874/100‑1 (MQ=255) gTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCGCTGCGTCCGGTTTCGGGGGCATATGGGCGTGACGGCATCCTGACGCCCGTTTTCTCCTTACTTcc > 1:278977/1‑100 (MQ=14) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg < 2:2088600/100‑1 (MQ=255) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg < 1:1223401/100‑1 (MQ=255) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg < 1:2189515/100‑1 (MQ=40) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg < 2:576198/100‑1 (MQ=40) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCgg < 1:170935/100‑1 (MQ=255) ggATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTa > 1:1019430/1‑100 (MQ=38) ggATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTa > 1:764420/1‑100 (MQ=38) aTACAAAGAAGTCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGTGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTAc < 2:2718658/99‑1 (MQ=255) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACg < 2:2331391/100‑1 (MQ=35) aCAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcc < 2:2474869/100‑1 (MQ=33) naaaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 1:133111/2‑100 (MQ=17) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 2:1447827/1‑100 (MQ=33) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 1:1071360/1‑100 (MQ=33) cAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGcca > 2:1753656/1‑100 (MQ=33) caaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccac > 2:1334539/2‑100 (MQ=18) aaaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGccac < 2:2265132/100‑1 (MQ=33) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAg < 1:2063443/100‑1 (MQ=32) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAg < 1:2061630/100‑1 (MQ=32) aaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGc < 1:37976/100‑1 (MQ=31) aaGGCCGCAGGCTGTTACCCCTGCGGCCGGGTACTGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTGACGCCACCAGc > 2:2760028/1‑100 (MQ=11) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCt > 1:185573/1‑100 (MQ=11) taaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTaataat > 2:2546164‑M2/42‑100 (MQ=255) ggtctgtttcgGGCGCATATTGCCATTGCGGCAGCCTTACGCCCGataccggccgcaggggtaacagcctgcggccatttttgtctttatcacttc < 1:2441270‑M1/91‑52 (MQ=255) ggCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccaca > 2:112546‑M1/1‑45 (MQ=255) ggTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatctcttccacaagt > 1:117902‑M1/1‑41 (MQ=255) ggTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagta > 2:1829291‑M1/1‑41 (MQ=255) ggTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagta > 2:229071‑M1/1‑41 (MQ=255) gTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaa > 1:1082323‑M1/1‑40 (MQ=255) gTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaa > 2:612314‑M1/1‑40 (MQ=255) gTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaa > 1:1035925‑M1/1‑40 (MQ=255) gTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaa > 2:2090560‑M1/1‑40 (MQ=255) gTTTCGGGCGCATATTGCCATCACGGCAGACTGACGCCCGaaaccggccgcaggggtaaccgcctgcggccatttttgtctttatcacttccacaagta > 1:685108‑M1/1‑40 (MQ=255) aaaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGcc > 1:153020‑M2/35‑100 (MQ=255) tttCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaaa > 1:2157312‑M1/1‑39 (MQ=255) aaacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGcc > 1:1772339‑M2/34‑99 (MQ=255) aacgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:1327375‑M2/33‑100 (MQ=255) tCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatctcttccacaagtaaata > 2:718863‑M1/1‑37 (MQ=255) acgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAgg > 1:423879‑M2/32‑100 (MQ=255) cgggcgtcaggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCCGACAATCGCTGCGGTAATAATTCCCGCCAGGa > 2:2756881‑M2/31‑100 (MQ=255) cGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatctcttccacaagtaaatat > 2:2411793‑M1/1‑36 (MQ=255) gggCGCATATTGCCATCACGGCAGCCTGACGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatctcttccacaagtaaatatt > 2:1010781‑M1/1‑35 (MQ=255) gtcaggctgccgtgatggcagcctgaCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGAGGTAATAATTCCCGCAAGGATCgg > 2:1182426‑M2/27‑100 (MQ=255) cGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaaatattggcaacccgagctggaagcctcatccaga < 1:751381‑M1/100‑95 (MQ=255) cGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaaatattggcaacccgagctggaagcctcatccaga < 2:768694‑M1/100‑95 (MQ=255) cGCCCGaaaccggccgcaggggtaacagcctgcggccatttttgtctttatcacttccacaagtaaatattggcaacccgagctggaagcctcatccaga > 1:434308‑M1/1‑6 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATc > 1:1118068‑M2/1‑99 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCa < 2:2738416‑M2/100‑1 (MQ=255) | GCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCA > NC_000913/1269055‑1269253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |