| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,970 | G→A | 31.3% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 31.3% | 263.5 / 136.4 | 163 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (53/59); new base A (40/11); total (93/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.79e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.72e-02 | |||||||||||
Only 100 of 172 total aligned reads displayed.
CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 | gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:1498265/1‑100 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcggc < 1:1019413/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg > 1:2275018/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:721412/100‑1 (MQ=255) ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:1414241/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2711336/1‑100 (MQ=255) tggccgATGGGGCTGCACGCAGAGGCACAGCGCCAGCGGGTATGCAGATGGGTGACTAAGTGTGCTTTGTTTATGCCGGATAAGGGGTTAACGccgca < 1:1204262/93‑4 (MQ=19) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTCGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2530029/1‑99 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:1056155/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 2:110610/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 2:1273241/100‑1 (MQ=37) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:812152/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:353427/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 2:1290454/1‑100 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2711346/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2556677/100‑3 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:670031/100‑3 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑a < 1:2392408/100‑1 (MQ=37) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a > 1:298616/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:2114859/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt < 1:1201430/100‑1 (MQ=255) cctctgcgtgcaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg > 1:2117929/11‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:1628590/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 2:156242/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAAGACTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:266293/99‑1 (MQ=255) ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt < 1:1399844/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:234040/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:1164818/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa < 1:748110/100‑1 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa > 2:1107768/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt > 2:1036276/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt > 2:75776/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:1044860/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 2:2254494/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg > 1:1714925/1‑100 (MQ=255) aacGGGTATACAGATTGTTGACAAAGTGCGCATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc > 2:1960069/3‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc > 2:213659/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc < 2:2662823/100‑1 (MQ=255) cggggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 1:319334/95‑1 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCa < 1:2901766/100‑1 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt < 1:2240157/100‑1 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAtt‑‑‑t > 1:783393/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑g < 1:1070657/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTCAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑Gt < 1:1863226/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTa < 1:1066102/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAg < 2:1931441/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGcc < 1:536930/99‑1 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGAt > 2:1373498/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGAt < 1:1023825/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATa > 1:2423367/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATa < 2:1553936/100‑1 (MQ=255) aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAg < 2:505799/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 1:1134315/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 1:105123/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 1:2875506/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 1:2282282/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc > 1:1899801/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCCTTAACCCCATAGCCGGCCT‑‑AC‑AAAGTCGTGCAAACTCCGTACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATCAGCGGAgc < 1:211091/100‑1 (MQ=18) attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcgc > 2:1839977/10‑100 (MQ=18) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:2088136/100‑1 (MQ=255) ttcgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCTC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:2311783/8‑100 (MQ=18) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:141256/1‑100 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGAC‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATc > 1:2351461/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAGT‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2138085/7‑100 (MQ=21) gatctggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATc < 2:1402921/94‑1 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:2447633/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1512983/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATc > 1:1920233/6‑100 (MQ=21) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCa < 2:1706794/95‑1 (MQ=18) gtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCT‑‑AC‑AAAAGCACGCAAATTCAATATATTGCA‑GAGAT‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:373862/5‑100 (MQ=14) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:621294/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:739538/4‑100 (MQ=25) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2291973/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg < 1:1396944/97‑1 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:889574/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2882801/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGGGCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2129657/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGGGCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1880716/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACCTGCAAATTCAATATATTGCA‑GGATA‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:150656/3‑100 (MQ=17) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:199529/100‑1 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2741719/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCTC‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2588977/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGAT‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:297573/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1317900/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:60616/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2211422/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATGCAATACATTGCA‑GAATT‑‑‑TTC‑‑CTAGGCCTGATAAGCGGTGCGCATCAGGCAt > 2:1143506/1‑100 (MQ=255) gCCGGATAAGGCGTTCGCGCCGCATCCGGCCT‑‑AC‑AAAAGTTTGCAAATTCAATAAATTGCA‑GAATT‑‑‑CAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAt > 2:2223264/1‑100 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCTC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:715891/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:1629349/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:1764218/1‑99 (MQ=25) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGATC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2513525/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1597626/1‑99 (MQ=21) gCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:39523/1‑100 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1448217/1‑100 (MQ=255) ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:849248/1‑100 (MQ=255) ccGGATAAGGCGTTAACGCCGCATCCGGCATAAAC‑AAAATCGTGCAAAATCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2065620/1‑100 (MQ=17) gATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 2:1616832/1‑100 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttt > 1:1390426/1‑98 (MQ=255) gcggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:1448220/100‑1 (MQ=255) | CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |