| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 39.5% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 39.5% | 218.6 / 240.0 | 205 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (57/67); new base C (71/10); total (128/77) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.46e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.34e-03 | |||||||||||
Only 100 of 205 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAG > NC_000913/3705887‑3706080 | ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2711336/1‑100 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTCGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2530029/1‑99 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:1056155/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 2:110610/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 2:1273241/100‑1 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:2627334/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1920883/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:353427/100‑2 (MQ=37) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 2:1290454/1‑100 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:670031/100‑3 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑a < 1:2392408/100‑1 (MQ=37) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a > 2:2135555/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaaa > 2:114740/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:2114859/1‑100 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt < 1:1201430/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:1628590/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:1164818/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 2:1442715/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 2:111010/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa < 1:748110/100‑1 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt > 2:1036276/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg > 1:1714925/1‑100 (MQ=255) aacGGGTATACAGATTGTTGACAAAGTGCGCATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc > 2:1960069/3‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc < 2:2680935/100‑1 (MQ=255) cggggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 1:319334/95‑1 (MQ=255) ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCa < 1:2901766/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑t‑‑‑tt > 1:2285169/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑g < 1:767779/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑g < 1:1070657/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑g > 2:1486724/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑Gt < 1:1056153/100‑1 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTa < 1:2253249/100‑1 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAg > 2:2234618/1‑100 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAgg < 1:2278694/100‑1 (MQ=255) ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGcc < 1:536930/99‑1 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGAt < 1:1023825/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATa > 1:2423367/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATa < 2:1553936/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg > 1:8102/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg < 2:2066772/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 1:1134315/1‑100 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg < 1:2875506/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCCTTAACCCCATAGCCGGCCT‑‑AC‑AAAGTCGTGCAAACTCCGTACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATCAGCGGAgc < 1:211091/100‑1 (MQ=18) attttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAgcgc > 2:796438/10‑100 (MQ=18) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa > 2:582712/1‑100 (MQ=255) tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:1362652/8‑100 (MQ=18) ttcgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:2311783/8‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGA‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATc > 1:2351461/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2138085/7‑100 (MQ=21) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:2447633/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:501784/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATc > 1:1920233/6‑100 (MQ=21) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCa < 2:1706794/95‑1 (MQ=18) gtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCT‑‑AC‑AAAAGCACGCAAATTCAATATATTGCA‑GAGA‑T‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:373862/5‑100 (MQ=14) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:621294/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2291973/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:739538/4‑100 (MQ=25) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2519674/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1396946/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg < 1:1396944/97‑1 (MQ=21) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2882801/3‑100 (MQ=18) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:889574/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2129657/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGGGC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1880716/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1492369/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACCTGCAAATTCAATATATTGCA‑GGAT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:150656/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAACCGCGCAAATTCAATATATTGCG‑GAGA‑A‑‑‑AAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 1:2602641/3‑99 (MQ=21) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:199529/100‑1 (MQ=255) ggctggataaggcgTTCACGCCGCATCCAGCCT‑‑AC‑AAAATTGTGCAAAATCAATGGATTGCA‑CAGC‑T‑‑‑AGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1699792/11‑100 (MQ=25) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:2212556/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2741719/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAgatc > 1:1402919/2‑97 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2211422/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1882686/1‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:715891/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:2906945/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:1764218/1‑99 (MQ=25) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2513525/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1597626/1‑99 (MQ=21) gCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:39523/1‑100 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1658508/9‑98 (MQ=21) ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2369487/9‑98 (MQ=21) ccggataaggcgTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:278676/9‑100 (MQ=18) ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1448217/1‑100 (MQ=255) ccGGATAAGGCGTTAACGCCGCATCCGGCATAAAC‑AAAATCGTGCAAAATCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2065620/1‑100 (MQ=17) cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttat > 2:185518/8‑98 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 2:2710258/8‑97 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:300180/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1379629/7‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1188413/7‑100 (MQ=17) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2675926/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1979177/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCAT‑‑AC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1835503/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGACCC‑‑AC‑AAAGTCTTGCAAAATCAATAAATTGCAGGAAC‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:88122/7‑96 (MQ=25) gataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGC‑C‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagcttt > 1:1840469/6‑95 (MQ=18) gATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 2:1616832/1‑100 (MQ=255) taaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGA‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttagc > 1:609151/4‑97 (MQ=17) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttt > 1:1390426/1‑98 (MQ=255) cgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2413054/100‑1 (MQ=255) aCGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:2587543/100‑1 (MQ=255) | GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAG > NC_000913/3705887‑3706080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |