Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,049,989 A→C 15.9% intergenic (+237/+144) polA → / ← yihA 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/cell division GTP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,049,9890AC15.9% 280.6 / 52.0 118intergenic (+237/+144)polA/yihA5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease/cell division GTP‑binding protein
Reads supporting (aligned to +/- strand):  ref base A (51/48);  new base C (14/5);  total (65/53)
Fisher's exact test for biased strand distribution p-value = 8.44e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.40e-01

Only 100 of 122 total aligned reads displayed.

GTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAC  >  NC_000913/4049890‑4050088
                                                                                                   |                                                                                                   
gTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTaa                                                                                                     >  2:1340555/1‑100 (MQ=255)
gTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTaa                                                                                                     >  2:2700096/1‑100 (MQ=255)
  tAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAAtn                                                                                                   <  1:2593761/100‑2 (MQ=255)
     tCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCGAGTCAGTAATGACt                                                                                                >  1:1978435/1‑100 (MQ=255)
      cgcgTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTg                                                                                               <  2:1139589/100‑1 (MQ=255)
        cgTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTggg                                                                                             <  2:2112104/100‑1 (MQ=255)
          tAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGc                                                                                           >  2:1638099/1‑100 (MQ=255)
          tAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGc                                                                                           >  2:797108/1‑100 (MQ=255)
          tAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGc                                                                                           <  1:1083119/100‑1 (MQ=255)
           aGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGCg                                                                                          <  2:2233515/100‑1 (MQ=255)
            gggTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGt                                                                                         >  2:1925385/1‑100 (MQ=255)
             ggTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGCggc                                                                                        <  1:844032/100‑3 (MQ=255)
               tACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttt                                                                                       <  1:435945/99‑1 (MQ=255)
                aCAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGCggctaa                                                                                     <  2:1713465/100‑6 (MQ=38)
                  agagGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTTGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTa                                                                                   <  1:1194253/100‑1 (MQ=255)
                   gagGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGtttttttt                                                                                  >  1:435705/1‑98 (MQ=255)
                   gagGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTAt                                                                                  <  1:1084553/100‑1 (MQ=255)
                   gagGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTAt                                                                                  >  1:2219156/1‑100 (MQ=255)
                     ggTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTg                                                                                <  2:2669542/100‑1 (MQ=255)
                      gTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTgg                                                                               >  2:1823696/1‑100 (MQ=255)
                       tAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTggg                                                                              <  1:1051185/100‑1 (MQ=255)
                        aaGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGc                                                                             <  2:1427075/100‑1 (MQ=255)
                        aaGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGc                                                                             <  2:333095/100‑1 (MQ=255)
                        aaGATGTTCTATCTTTCAGACCTTTGACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTggg                                                                              <  1:161472/99‑1 (MQ=255)
                          gATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCga                                                                           >  2:1621482/1‑100 (MQ=255)
                          gATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCga                                                                           >  2:75047/1‑100 (MQ=255)
                             gTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaag                                                                        >  1:2568943/1‑100 (MQ=255)
                             gTTCTATCTGGCAGTCGTTGTTCTGCATTTAATCGGGTTTGGCTGTGTATTTTAGTCGCCCGAGTCAGTAATGACGGGGGCGTTTTTTATTGGGCgaaag                                                                        >  1:2318166/1‑100 (MQ=255)
                                cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCCGTAATGACTGGGGCTGTTTTTATAGGGCgaaagaa                                                                      >  1:1460942/1‑99 (MQ=255)
                                cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                     >  1:877327/1‑100 (MQ=255)
                                cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                     >  2:2757312/1‑100 (MQ=255)
                                  aTCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGaaagaaaag                                                                   >  2:1587506/1‑100 (MQ=255)
                                  aTCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCACCAGTCAATAATGACTGGGGCGTTTTTTATTGCGCGaaagaaaag                                                                   >  2:566506/1‑100 (MQ=255)
                                    cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGAt                                                                 >  2:241225/1‑100 (MQ=255)
                                    cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGAt                                                                 >  2:2600349/1‑100 (MQ=255)
                                    cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGAt                                                                 <  1:1340553/100‑1 (MQ=255)
                                    cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAATCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGAt                                                                 >  1:1863698/1‑100 (MQ=255)
                                     tttCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc                                                                <  2:1597976/100‑1 (MQ=255)
                                     tttCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc                                                                <  1:2235588/100‑1 (MQ=255)
                                         aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTa                                                            >  1:2564579/1‑100 (MQ=255)
                                          gACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTaa                                                           >  2:2501458/1‑100 (MQ=255)
                                           aCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGTAAAGATCCGTact                                                          <  2:1978443/100‑3 (MQ=255)
                                           aCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTaa                                                           <  1:428651/99‑1 (MQ=255)
                                           aCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAAt                                                          <  2:690982/100‑1 (MQ=255)
                                             cTTTTACTTCNCGTAANCGNATTTGGCTGCNTCNTTTAGCCNACCTNGTCAGTAATGACCGGGGCGTTTTTTATTGGGCGAAAGACAAGAttag                                                              >  1:2449440/1‑91 (MQ=255)
                                             cTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGc                                                        <  2:2794266/100‑1 (MQ=255)
                                              ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGcc                                                       >  1:2885921/1‑100 (MQ=255)
                                               tgtACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCt                                                      <  1:1758184/98‑1 (MQ=255)
                                                    ttCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATgc                                                 >  2:906239/1‑100 (MQ=255)
                                                       aCGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCt                                              <  1:2301817/100‑1 (MQ=255)
                                                          tAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATg                                           >  1:1066386/1‑100 (MQ=255)
                                                           aaTCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGTGCTCAAGAAAAGATCCGTAATGCCTGATGCGCTATg                                           >  2:275221/1‑99 (MQ=255)
                                                           aaTCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGt                                          <  1:2607557/100‑1 (MQ=255)
                                                           aaTCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGt                                          >  2:2014100/1‑100 (MQ=255)
                                                              cGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTa                                       <  2:2230228/100‑1 (MQ=255)
                                                               ggATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTAt                                      >  1:865520/1‑100 (MQ=255)
                                                                gATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATc                                     <  1:2881761/100‑1 (MQ=255)
                                                                    tGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGc                                 <  2:287770/100‑1 (MQ=255)
                                                                      gCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCa                               <  1:941144/100‑1 (MQ=255)
                                                                      gCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCa                               >  2:691870/1‑100 (MQ=255)
                                                                      gCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCa                               <  2:71117/100‑1 (MQ=255)
                                                                       cTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCaa                              >  1:2711724/1‑100 (MQ=255)
                                                                        tGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCaan                             <  2:1373767/100‑2 (MQ=255)
                                                                        tGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAAc                             <  1:517996/100‑1 (MQ=255)
                                                                          aaTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACgg                           <  1:1762295/100‑1 (MQ=255)
                                                                           caataaaaaacgccCCAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGt                          <  2:1408018/90‑1 (MQ=37)
                                                                            tatTTTAGCCGCCTCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATTCCTGATGCGCTATGTTTATCAGGCCAACGGTa                         <  1:271189/100‑1 (MQ=255)
                                                                             atTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAg                        <  2:1668870/100‑1 (MQ=255)
                                                                               tttAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGaa                      <  2:279875/100‑1 (MQ=255)
                                                                               aaaaaacgccCCAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGaa                      >  1:2836085/7‑100 (MQ=38)
                                                                                ttAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAAt                     <  2:258769/100‑1 (MQ=255)
                                                                                  aGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTg                   <  2:141879/100‑1 (MQ=255)
                                                                                  aGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTg                   <  2:1017838/100‑1 (MQ=255)
                                                                                   gccgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGt                  >  2:2388965/1‑100 (MQ=255)
                                                                                    ccgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGt                  >  2:2023707/1‑99 (MQ=255)
                                                                                    ccgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGt                  <  2:711862/99‑1 (MQ=255)
                                                                                     cgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTaa                >  1:2158268/1‑100 (MQ=255)
                                                                                      gccCCAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAAt               >  2:313525/1‑100 (MQ=255)
                                                                                      gccCCAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAAt               >  2:2493992/1‑100 (MQ=255)
                                                                                      gccCCAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAAt               >  2:2058711/1‑100 (MQ=255)
                                                                                      gccCCAGTCATTACTGACTGGGGCGTTTTTCATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTa                 >  1:36639/1‑98 (MQ=39)
                                                                                      gccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAAt               >  2:2600113/1‑100 (MQ=255)
                                                                                      gaccgagtcagtAATGACTGGGGCGTTTTTTATCGAGCGAAAGAAAAGATCCGTCATGCCTGATGCACTATGTTTATCAGGCCAACGGTAGAATTGTAAt               <  1:1937837/95‑1 (MQ=255)
                                                                                       ccccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              >  2:739692/1‑100 (MQ=255)
                                                                                       ccccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              >  1:1369916/1‑100 (MQ=255)
                                                                                       ccccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              >  2:2400497/1‑100 (MQ=255)
                                                                                       ccccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              >  2:218361/1‑100 (MQ=255)
                                                                                       ccccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              >  1:986738/1‑100 (MQ=255)
                                                                                       ccccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              <  2:2780218/100‑1 (MQ=255)
                                                                                       ccccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc              >  2:1384424/1‑100 (MQ=255)
                                                                                        cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCt             >  1:2383550/1‑100 (MQ=255)
                                                                                        cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCt             >  1:2164143/1‑100 (MQ=255)
                                                                                          cagtcattACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTAt           >  2:335188/1‑100 (MQ=255)
                                                                                          cagtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTan           <  2:2585714/100‑2 (MQ=255)
                                                                                          cagtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTAt           <  1:2815236/100‑1 (MQ=255)
                                                                                            gtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTg         <  1:162152/100‑1 (MQ=255)
                                                                                               agtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAt      <  1:33366/100‑1 (MQ=255)
                                                                                                gtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAtt     >  1:2873365/1‑100 (MQ=255)
                                                                                                 tAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAttt    >  1:768544/1‑100 (MQ=255)
                                                                                                   aTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTAATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAc  <  1:2618068/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAC  >  NC_000913/4049890‑4050088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: