BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,406,098	C→T	15.3%	D40D (GAC→GAT)	smrA →	DNA endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,406,098	0	C	T	15.3%	310.7 / 39.2	124	D40D (GAC→GAT)	smrA	DNA endonuclease
Reads supporting (aligned to +/- strand): ref base C (61/44); new base T (13/6); total (74/50)
Fisher's exact test for biased strand distribution p-value = 4.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.55e-01

Only 100 of 130 total aligned reads displayed.

GCTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATGGGGT  >  NC_000913/1405999‑1406196

gCTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGac                                                                                                    >  1:340363/1‑100 (MQ=255)

gCTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGac                                                                                                    >  1:2867540/1‑100 (MQ=255)

gCTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGac                                                                                                    <  2:568058/100‑1 (MQ=255)

 cTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGaca                                                                                                   <  2:217527/100‑1 (MQ=255)

   gTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCACAGCGTATCGACACg                                                                                                 <  2:1132265/100‑1 (MQ=255)

    tttCTTGACGCCATGGAATATGTCCAGCCGCTGAAACGTGATACCGACGTCCACTGGCATCCATCGCATAAACAACGTGCTCCGCAGCGTATCGACACGc                                                                                                <  1:2251271/100‑1 (MQ=255)

    tttCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGc                                                                                                <  1:405464/100‑1 (MQ=255)

     ttCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCt                                                                                               <  2:340365/100‑1 (MQ=255)

       cTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGc                                                                                             >  1:1140805/1‑100 (MQ=255)

       cTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGc                                                                                             >  1:795287/1‑100 (MQ=255)

        ttGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCGCACGCGTAAGCAACGTGCGCCGCAGCGTATCGACACGCTGCa                                                                                            >  1:2042728/1‑100 (MQ=255)

         tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcgg                                                                                           <  2:722118/100‑3 (MQ=255)

         tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGcgg                                                                                           <  1:805119/100‑3 (MQ=255)

         tGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTACACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAg                                                                                           >  2:415979/1‑100 (MQ=255)

          gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGCGGc                                                                                          <  1:1706502/100‑1 (MQ=255)

          gACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGCGGc                                                                                          <  2:1556923/100‑1 (MQ=255)

            cgctgtGGAAGTGGTCGAGCTTCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCt                                                                                         <  2:2717417/94‑1 (MQ=255)

            cGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTGCCGCTGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGc                                                                                             <  1:2157192/95‑1 (MQ=255)

            cGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCtt                                                                                        >  2:2405962/1‑100 (MQ=255)

            cGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCtt                                                                                        <  1:894607/100‑1 (MQ=255)

             gCCATGGCAGATGTCCAGCCGCTGAAACGCGCTACCTATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTGTCGATACGCTGCGGc                                                                                          <  1:2242210/97‑1 (MQ=255)

             gCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTg                                                                                       <  1:2707190/100‑1 (MQ=255)

              ccATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGa                                                                                      >  1:1387286/1‑100 (MQ=255)

              ccATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGa                                                                                      >  1:1386651/1‑100 (MQ=255)

               cATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGAt                                                                                     <  2:958819/100‑1 (MQ=255)

                  ggAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAAt                                                                                  >  2:1314693/1‑100 (MQ=255)

                    aaGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAAttt                                                                                <  2:713587/100‑1 (MQ=255)

                      gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              <  2:46452/100‑1 (MQ=255)

                      gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              >  2:860779/1‑100 (MQ=255)

                      gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              <  2:986301/100‑1 (MQ=255)

                      gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              <  1:359304/100‑1 (MQ=255)

                      gATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTcc                                                                              <  1:1161158/100‑1 (MQ=255)

                        tGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTc                                                                            >  2:2223655/1‑100 (MQ=255)

                        tGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTc                                                                            <  2:2781837/100‑1 (MQ=255)

                         gTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTc                                                                            >  2:2659682/1‑99 (MQ=255)

                             aGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCATAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTcaccac                                                                       >  2:612557/1‑100 (MQ=255)

                               ccGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCg                                                                     >  2:981785/1‑100 (MQ=255)

                               ccGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCg                                                                     >  1:575416/1‑100 (MQ=255)

                                 gCTGAAACGTGCTACCGATGTCCACTGGCATCCAACTCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCTCCGGa                                                                   <  2:2045183/100‑1 (MQ=255)

                                  cTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGAt                                                                  >  2:2887075/1‑100 (MQ=255)

                                    gAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGAttt                                                                >  1:1606837/1‑100 (MQ=255)

                                    gAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGAtt                                                                 >  1:2622005/1‑99 (MQ=255)

                                      aaCGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTtct                                                              >  1:2219972/1‑100 (MQ=255)

                                      aaCGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTtct                                                              >  2:381607/1‑100 (MQ=255)

                                        cGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCg                                                            >  1:1954065/1‑100 (MQ=255)

                                        cGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCg                                                            <  2:1427387/100‑1 (MQ=255)

                                         gTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGa                                                           >  1:397704/1‑100 (MQ=255)

                                         gTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGa                                                           <  1:934420/100‑1 (MQ=255)

                                          tGCTACCTATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAc                                                          <  2:71988/100‑1 (MQ=255)

                                          tGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAc                                                          <  2:2716655/100‑1 (MQ=255)

                                           gCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTCTCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAca                                                         >  2:1217971/1‑100 (MQ=255)

                                           gCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAca                                                         >  2:2713573/1‑100 (MQ=255)

                                            cTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcat                                                        >  2:2652869/1‑100 (MQ=255)

                                              aCCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatca                                                      <  2:1388972/100‑1 (MQ=255)

                                              aCCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatca                                                      >  2:43156/1‑100 (MQ=255)

                                               ccGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatcat                                                     >  1:2611951/1‑100 (MQ=255)

                                               ccGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGAcatcat                                                     >  2:1706259/1‑100 (MQ=255)

                                                 gATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATcc                                                   >  1:951504/1‑100 (MQ=255)

                                                  aTGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATccc                                                  <  1:43155/100‑1 (MQ=255)

                                                      ccACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTa                                              <  2:1992268/100‑1 (MQ=255)

                                                        aCTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAg                                            <  2:2425439/100‑1 (MQ=255)

                                                        aCTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAg                                            <  2:1647300/100‑1 (MQ=255)

                                                         cTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGt                                           >  2:2178655/1‑100 (MQ=255)

                                                         cTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGt                                           >  1:584145/1‑100 (MQ=255)

                                                         cTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACCCTGCAGCTTGATAATTTCCTCACCCCCGGATCTCCCGACATCCTCCCACTCAGt                                           >  2:739473/1‑100 (MQ=255)

                                                          tGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTc                                          <  2:2553357/100‑1 (MQ=255)

                                                           ggCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCa                                         >  1:1367613/1‑100 (MQ=255)

                                                            gCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAg                                        <  2:354001/100‑1 (MQ=255)

                                                             cATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGc                                       >  2:1905019/1‑100 (MQ=255)

                                                             cATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGc                                       <  1:2119272/100‑1 (MQ=255)

                                                                   aCGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTgg                                 <  2:1454820/100‑1 (MQ=255)

                                                                    cgcgTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGa                                <  2:1864039/100‑1 (MQ=255)

                                                                        tAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGttt                            >  1:309774/1‑100 (MQ=255)

                                                                           ccAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcgg                         >  1:1139012/1‑100 (MQ=255)

                                                                           ccAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcgg                         >  1:2648492/1‑100 (MQ=255)

                                                                           ccAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcgg                         >  1:1599647/1‑100 (MQ=255)

                                                                             atcttGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTcggcg                       <  2:1427567/96‑1 (MQ=255)

                                                                               cGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCggg                     >  1:954072/1‑100 (MQ=255)

                                                                                gTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGa                    <  1:2431168/100‑1 (MQ=255)

                                                                                   agctgtaGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAgg                 >  1:1667925/7‑100 (MQ=255)

                                                                                   agctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAgg                 >  1:2410499/5‑100 (MQ=255)

                                                                                   agctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAgg                 >  1:1316923/5‑100 (MQ=255)

                                                                                   agctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAgg                 >  2:2660637/5‑100 (MQ=255)

                                                                                    gctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                >  1:928984/4‑100 (MQ=255)

                                                                                    gctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAggg                >  2:625799/4‑100 (MQ=255)

                                                                                     ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  2:336787/3‑100 (MQ=255)

                                                                                     ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  2:2143404/3‑100 (MQ=255)

                                                                                     ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  2:2656008/3‑100 (MQ=255)

                                                                                     ctgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  1:1513678/3‑100 (MQ=255)

                                                                                     ccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               <  2:915932/100‑1 (MQ=255)

                                                                                     ccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               >  1:2404802/1‑100 (MQ=255)

                                                                                     ccgcAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGt               <  2:1184213/100‑1 (MQ=255)

                                                                                      tgcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGtt              >  2:1010337/2‑100 (MQ=255)

                                                                                       gcAGCGTGTCGATACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTg             >  2:92116/1‑100 (MQ=255)

                                                                                        cAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGc            <  1:2117972/100‑1 (MQ=255)

                                                                                             tATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACAt       >  2:2080789/1‑100 (MQ=255)

                                                                                                cGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATggg    <  1:876906/100‑1 (MQ=255)

                                                                                                 gACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATgggg   >  2:2745641/1‑100 (MQ=255)

                                                                                                 gACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATgggg   >  2:1861880/1‑100 (MQ=255)

                                                                                                  acacGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATGGGGt  <  1:988044/100‑1 (MQ=255)

GCTGTTTCTTGACGCCATGGAAGATGTCCAGCCGCTGAAACGTGCTACCGATGTCCACTGGCATCCAACGCGTAACCAACGTGCGCCGCAGCGTATCGACACGCTGCAGCTTGATAATTTCCTCACCACCGGATTTCTCGACATCATCCCACTAAGTCAGCCGCTGGAGTTTCGGCGGGAAGGGTTGCAACATGGGGT  >  NC_000913/1405999‑1406196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`