| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,803,104 | A→G | 100% | pseudogene (11/426 nt) | arpB → | pseudogene, ankyrin repeats |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,803,104 | 0 | A | G | 95.5% | 274.0 / 1.5 | 88 | pseudogene (11/426 nt) | arpB | pseudogene, ankyrin repeats |
| Reads supporting (aligned to +/- strand): ref base A (3/1); new base G (33/50); total (36/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 | |||||||||||
TAACAATTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTG > NC_000913/1803007‑1803199 | taACAATTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCg > 2:2305163/1‑100 (MQ=255) aaCAATTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGa < 2:1506105/100‑1 (MQ=255) aCAATTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGat > 1:1579352/1‑100 (MQ=255) cAATTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGata > 1:1441320/1‑100 (MQ=255) aTTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCTAACAGATTATGAGTCAAAGCGATATc > 1:2443125/1‑100 (MQ=255) aTTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATc < 1:855836/100‑1 (MQ=255) aTTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATc < 1:1261225/100‑1 (MQ=255) ttttCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCAt < 1:1587734/100‑1 (MQ=255) ttCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTa < 1:376223/100‑1 (MQ=255) ttCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTa > 2:1865856/1‑100 (MQ=255) ttCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTa < 2:763229/100‑1 (MQ=255) tCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTAt < 2:1606993/100‑1 (MQ=255) cGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATc > 2:250869/1‑100 (MQ=255) cGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATc < 1:943140/100‑1 (MQ=255) cGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATc < 1:611635/100‑1 (MQ=255) gTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCa < 2:24930/100‑1 (MQ=255) gCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGa < 2:224799/100‑1 (MQ=255) acaTTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATAGAAGGCGAACATATTATGAGTCAAAGCGATATCATTATCAGAAc > 2:1585259/1‑100 (MQ=255) caTTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACt < 2:579883/100‑1 (MQ=255) cGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATta < 2:2267943/100‑1 (MQ=255) cGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATta < 1:1179614/100‑1 (MQ=255) ttCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATtata < 2:818384/100‑1 (MQ=255) tCTGGCGATTATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATaa < 1:694470/100‑1 (MQ=255) cttacGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAg < 1:2753773/96‑1 (MQ=255) ctggttttaattattaattatCATCTTCTAAACCTCCAGTTTTATATATGGCAAAAATATTATGATTCAATTCGATCTCATTATCAGAACTCa < 1:1297045/86‑1 (MQ=255) cTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAg > 2:2842647/1‑100 (MQ=255) tGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGt > 2:1929266/1‑100 (MQ=255) ngCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGtc > 2:2319208/2‑100 (MQ=255) gATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAGGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTctcc < 1:2865740/100‑1 (MQ=255) ataataATTAATCATCATCCTCAAAACCTCCAGATAGATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGtct < 1:2079618/97‑1 (MQ=255) taataaTTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTctcctc > 1:215390/1‑100 (MQ=255) aattaatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAg < 2:797219/100‑1 (MQ=255) attaatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGa > 2:2687924/1‑100 (MQ=255) attaatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGa > 2:51006/1‑100 (MQ=255) aatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTg < 2:342289/100‑1 (MQ=255) aatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTg < 2:1921111/100‑1 (MQ=255) aatCATCACCCACAAAAAATCAAGATATATATAAGGAGAACTGATTATGAATAAAAGAGATATCATTATCAGAACTCCTTATCAGTAACCAAATAGAttn < 1:2612003/100‑2 (MQ=255) atcatcaacCTCAAGACCTCCAGATATAGATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGc < 1:2336681/100‑1 (MQ=255) tcatcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGca < 1:1080829/100‑1 (MQ=255) tcatcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCAATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGca < 1:918103/100‑1 (MQ=255) catcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGcac > 1:2305740/1‑100 (MQ=255) catcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATc > 1:1796392/1‑100 (MQ=255) catcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATc < 2:245511/100‑1 (MQ=255) catcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATc < 2:1579356/100‑1 (MQ=255) atcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCg < 1:840188/100‑1 (MQ=255) atcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCg < 2:1654554/100‑1 (MQ=255) atcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCg > 1:1279704/1‑100 (MQ=255) tcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGa < 1:63759/100‑1 (MQ=255) ccTCAAAACCTCCAGATATATATAAGGCGACCAGATTATGAGTCAAAGCCATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACAt > 1:2214998/1‑96 (MQ=255) cTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATa > 2:815007/1‑100 (MQ=255) cTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATa > 2:1147848/1‑100 (MQ=255) cTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATa < 1:905136/100‑1 (MQ=255) tCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAg < 2:350517/100‑1 (MQ=255) cAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGc < 2:1878373/100‑1 (MQ=255) aaaaCCTGCAGCTATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCAGTATAAGTATCCTCATAGATTGCACATCGATAGCg > 1:1524214/1‑100 (MQ=255) aaaaCCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCg > 2:1076883/1‑100 (MQ=255) aaacTCAAGGTATATATAAGGCGAAAAAATTATAAGTCAAAGAGATATTATTATCAGAACTAATTAAAAATATACTCATAGATTGCACATCAATAGCAAc > 1:739897/4‑100 (MQ=255) ccAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATAcc < 1:1237120/100‑1 (MQ=255) ccAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATAcc < 1:866150/100‑1 (MQ=255) cAGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCa < 2:2177611/100‑1 (MQ=255) aGATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATTGATAGCGACATACCaa > 2:740673/1‑100 (MQ=255) gATATATATAAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAac > 2:740900/1‑100 (MQ=255) atatatatAAGCCGAACAGAGTATGAGTCAAAACGATATCATTATCAGAACGCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCCac < 1:283287/99‑1 (MQ=255) tatatataAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAacac < 1:1757228/100‑1 (MQ=255) tatataAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCt > 2:459029/1‑100 (MQ=255) tatataAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCt > 2:2589024/1‑100 (MQ=255) tataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtc > 2:1833234/1‑100 (MQ=255) ataAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtca < 2:1847000/100‑1 (MQ=255) ataAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtca < 1:459028/100‑1 (MQ=255) taAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcat > 2:1700001/1‑100 (MQ=255) taAGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcat > 2:2528873/1‑100 (MQ=255) aaGGCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcatc < 2:269714/100‑1 (MQ=255) gCGAACAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCaga < 2:357683/100‑1 (MQ=255) aaCAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGcc < 2:2441596/100‑1 (MQ=255) aaCAGATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGcc < 2:2083267/100‑1 (MQ=255) gATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATATATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTAtt < 1:591605/100‑1 (MQ=255) gATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATATCGACATACCAACACCTTCATCAGAGCCTAtt < 2:475012/100‑1 (MQ=255) gATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTAtt > 1:248141/1‑100 (MQ=255) gATTATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTAtt < 1:2250179/100‑1 (MQ=255) ttATGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTan < 1:2319197/100‑2 (MQ=255) aTGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATc < 2:1753237/100‑1 (MQ=255) aTGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATc < 1:300942/100‑1 (MQ=255) tGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCa > 1:50612/1‑100 (MQ=255) tGAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCa > 2:148376/1‑100 (MQ=255) ggAGTCAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCa > 1:503850/2‑100 (MQ=255) gTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAAtt > 2:1484702/1‑100 (MQ=255) cAAAGCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAAttt > 1:2355026/1‑99 (MQ=255) cAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTg > 2:1220842/1‑100 (MQ=255) | TAACAATTTTTCGTGCACATTTCGTTCTGGCGATAATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTG > NC_000913/1803007‑1803199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |