| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 33.5% | 361.6 / 211.0 | 230 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (84/69); new base A (71/6); total (155/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.30e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.06e-01 | |||||||||||
Only 100 of 233 total aligned reads displayed.
GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGC > NC_000913/3705873‑3706068 | gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 1:1916217/1‑100 (MQ=255) gAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg > 2:628601/1‑99 (MQ=255) tGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGtt > 2:703602/1‑100 (MQ=255) gAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTa < 1:1120067/100‑1 (MQ=255) aGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAc > 1:3186732/1‑100 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc < 1:1311204/100‑1 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:1408319/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:1467429/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTGTGCCGGATGCGGCGTTAACGCCTTAt > 1:1380772/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:2130855/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:1228278/100‑1 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc > 2:2765359/1‑100 (MQ=255) tgtcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATa < 2:2597359/97‑1 (MQ=25) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc < 2:37798/100‑1 (MQ=255) ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc < 2:34747/100‑1 (MQ=255) ncgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 2:2870104/2‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3175436/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:1146424/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:834200/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 2:1328782/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:569584/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:236809/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt < 1:1218372/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGTCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:2685174/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:2906089/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:1050419/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:273720/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:1303335/1‑100 (MQ=255) agGCACAGCGCCACCGGGTATACAGAATGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAt > 1:1987533/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 1:2840855/100‑1 (MQ=255) cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACa < 2:299161/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt < 1:2410621/100‑1 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑At < 2:1533940/100‑1 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTc < 2:2928411/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑g > 2:1735310/1‑100 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑Gt > 1:879260/1‑100 (MQ=255) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTcn < 2:464951/98‑2 (MQ=255) aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCATGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAg < 1:3094939/100‑1 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGc > 1:2091747/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGc < 2:613185/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGcc > 2:742067/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGcc < 1:2433058/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGcc < 1:3063285/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAAACATTGC‑‑A‑GC‑ATT‑‑‑TTC‑‑GTAGGACt > 2:1344293/1‑98 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATa < 2:3244934/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATa < 1:820931/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATa < 2:1142706/100‑1 (MQ=255) aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATaa < 2:1583110/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGc < 2:3245923/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGc > 2:1105529/1‑100 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCg < 1:1566178/100‑1 (MQ=255) gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCg < 2:2172200/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:2390336/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 1:2766322/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 1:381876/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa < 1:1467443/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa > 2:1012508/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:703611/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:2770920/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGCTAAGCGGAGCGCa < 2:2019973/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGC‑‑A‑CC‑ATC‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:510925/8‑100 (MQ=18) tGTTTATGCCGGATGGGGCGTTAGCGCCTTATCCGGTCTAC‑AAGATCGTGCAAATTCGATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:254476/99‑1 (MQ=18) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:1181973/7‑100 (MQ=18) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGATT‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:2345972/7‑100 (MQ=17) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:1509871/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 2:1826380/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:2237852/6‑99 (MQ=17) cgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGT‑‑G‑GG‑CTC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2242991/6‑100 (MQ=21) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGG‑GCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:3022136/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑‑A‑AG‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:620308/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GA‑GAT‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:780444/5‑100 (MQ=17) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTGC‑‑G‑GA‑GAA‑‑‑AAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1477032/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGC‑‑A‑GA‑AAT‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2269847/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTGC‑‑A‑GA‑GAT‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:409248/4‑100 (MQ=11) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AGC‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1747510/4‑100 (MQ=18) atgtcGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:2685208/96‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGG‑GCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:100649/3‑100 (MQ=17) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGC‑‑A‑GA‑GTT‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1550216/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:246921/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑‑A‑TG‑AGC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2428923/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑‑A‑AG‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2966014/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AGC‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1668977/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGC‑‑A‑GG‑AGT‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2180027/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTGCGGA‑GA‑AAA‑‑‑T‑‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:1160865/3‑99 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:19963/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGG‑GCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3200750/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3169858/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGA‑‑T‑CG‑ATC‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:35164/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑ATC‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:625132/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑‑A‑GG‑GAC‑‑‑TAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 1:2664858/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGC‑‑A‑GAGATT‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2262885/2‑100 (MQ=17) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2120521/1‑100 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:736298/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑‑A‑GA‑AAC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:177402/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑‑A‑ATT‑‑‑CTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:1821118/1‑98 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑‑ATGG‑GCC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2633705/1‑99 (MQ=17) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑‑‑A‑ATTCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:3137849/1‑100 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑‑A‑GG‑ACC‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:773671/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑‑A‑GG‑AGC‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1724615/1‑99 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:4128/100‑1 (MQ=255) | GGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑‑A‑GA‑ATT‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGC > NC_000913/3705873‑3706068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |