BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,891,662	C→T	P16P (CCC→CCT)	mdtL →	multidrug efflux system protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,891,662	0	C	T	100.0%	392.2 / NA	114	P16P (CCC→CCT)	mdtL	multidrug efflux system protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (55/59); total (55/59)

Only 100 of 115 total aligned reads displayed.

CTTCACCACGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATAT  >  NC_000913/3891566‑3891755

ctTCACCACGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCctgcc                                                                                            >  1:917348/1‑100 (MQ=255)

  tCACCACGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCgg                                                                                          <  2:1760150/100‑1 (MQ=255)

  tCACCACGTACGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTATAGTTTTGCCCTGGTTTTACTTTATCCTGCCgg                                                                                          <  2:2147850/100‑1 (MQ=255)

   caccacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCggg                                                                                         >  2:2870995/1‑100 (MQ=255)

    accacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGa                                                                                        >  2:631474/1‑100 (MQ=255)

    accacGTATGCCTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGCTTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCggg                                                                                         >  1:633822/1‑99 (MQ=255)

     ccacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGAt                                                                                       >  1:1843169/1‑100 (MQ=255)

     ccacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGAt                                                                                       >  1:394084/1‑100 (MQ=255)

      cacGTATGCTTTGCGTCACCTTGCTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGTTTTTACTTTATCCTGCCGGGAtt                                                                                      >  2:1900297/1‑100 (MQ=255)

      cacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGAtt                                                                                      >  2:3208169/1‑100 (MQ=255)

      cacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGAtt                                                                                      >  1:1577260/1‑100 (MQ=255)

      cacGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGAtt                                                                                      <  2:459875/100‑1 (MQ=255)

        cGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGa                                                                                    <  1:2306747/100‑1 (MQ=255)

         gTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGat                                                                                   <  2:1541490/100‑1 (MQ=255)

         gTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGat                                                                                   <  1:719295/100‑1 (MQ=255)

          tATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGata                                                                                  <  1:2452651/100‑1 (MQ=255)

          tATGCTTTGCCTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGata                                                                                  <  2:2913147/100‑1 (MQ=255)

            tGCTTTTCGTCACCTTACTGTCAGCACGCTTTAGCCCATGTCCCGCNTTTTTATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGatatn                                                                                <  2:1307765/100‑2 (MQ=255)

            tGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATg                                                                                >  2:3239697/1‑100 (MQ=255)

             gCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGt                                                                               <  2:1267911/100‑1 (MQ=255)

              cTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGTTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTa                                                                              <  2:2090409/100‑1 (MQ=255)

              cTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTa                                                                              <  1:3191878/100‑1 (MQ=255)

               tttGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTAc                                                                             >  2:2424783/1‑100 (MQ=255)

                ttGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTAcc                                                                            <  1:1550580/100‑1 (MQ=255)

                  gCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTc                                                                          >  1:1646138/1‑100 (MQ=255)

                  gCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTc                                                                          <  2:525499/100‑1 (MQ=255)

                  gCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTc                                                                          >  2:1014490/1‑100 (MQ=255)

                   cGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCg                                                                         >  2:1483748/1‑100 (MQ=255)

                   cGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCg                                                                         >  1:1330745/1‑100 (MQ=255)

                    gTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGt                                                                        >  2:2507446/1‑100 (MQ=255)

                      cACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTg                                                                      >  2:2541060/1‑100 (MQ=255)

                       aCCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTgg                                                                     <  1:1674496/100‑1 (MQ=255)

                       aCCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTgg                                                                     <  1:2568795/100‑1 (MQ=255)

                       aCCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTgg                                                                     >  1:1354556/1‑100 (MQ=255)

                        ccTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGt                                                                    >  1:706740/1‑100 (MQ=255)

                        ccTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGt                                                                    >  2:2316656/1‑100 (MQ=255)

                           tACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTa                                                                 >  2:824483/1‑100 (MQ=255)

                               aTCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACcgc                                                             <  2:1659326/100‑1 (MQ=255)

                                  aGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCa                                                          >  1:1873231/1‑100 (MQ=255)

                                   ggACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCAt                                                         >  2:2103587/1‑100 (MQ=255)

                                   ggACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCAt                                                         >  1:1132246/1‑100 (MQ=255)

                                   ggACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCAt                                                         >  1:1176330/1‑100 (MQ=255)

                                       gCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATcgcc                                                     <  1:1143892/100‑1 (MQ=255)

                                        cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATcgccg                                                    <  2:2168104/100‑1 (MQ=255)

                                        cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATcgccg                                                    >  2:2830209/1‑100 (MQ=255)

                                        cTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATcgccg                                                    >  2:3198222/1‑100 (MQ=255)

                                         tttAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATcgccgc                                                   <  1:330110/100‑1 (MQ=255)

                                             gCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGAt                                               >  2:2225498/1‑100 (MQ=255)

                                              cccATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGAtc                                              <  1:1761950/100‑1 (MQ=255)

                                              cccATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGAtc                                              >  1:1444852/1‑100 (MQ=255)

                                                    tCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATg                                        <  2:1357800/100‑1 (MQ=255)

                                                     cccGCTTTTTTTTTTTTTTTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGTTCTCatt                                         >  2:1503470/1‑96 (MQ=255)

                                                     cccGCTTTTTTTTTTTTTTTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCatt                                         >  2:475498/1‑96 (MQ=255)

                                                      ccGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGcc                                      >  2:1679127/1‑100 (MQ=255)

                                                         cTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGc                                   >  1:2011844/1‑100 (MQ=255)

                                                          tttttGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCg                                  <  2:1218542/100‑1 (MQ=255)

                                                             ttGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAg                               >  1:1555977/1‑100 (MQ=255)

                                                             ttGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAg                               >  2:266444/1‑100 (MQ=255)

                                                              tGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgc                              >  2:616865/1‑100 (MQ=255)

                                                               gATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgcg                             <  1:2759843/100‑1 (MQ=255)

                                                               gATTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgcg                             >  1:2824627/1‑100 (MQ=255)

                                                                aTTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCTTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgcgc                            >  2:340638/1‑100 (MQ=255)

                                                                aTTTGTAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgcgc                            <  2:1769941/100‑1 (MQ=255)

                                                                aTTTGTACTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAgcg                             <  1:1834021/99‑1 (MQ=255)

                                                                     tAGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTg                       <  2:917336/100‑1 (MQ=255)

                                                                      aGTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGc                      <  2:1069268/100‑1 (MQ=255)

                                                                       gTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCa                     >  1:1928528/1‑100 (MQ=255)

                                                                       gTTTTGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCa                     <  2:163261/100‑1 (MQ=255)

                                                                         tttGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTAACGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCata                   <  1:2143644/100‑1 (MQ=255)

                                                                           tGCGCTGGTTTTACTTTGTCCTGCCTGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATAtt                 <  2:3148605/100‑1 (MQ=255)

                                                                           tGCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATAtt                 <  2:3148646/100‑1 (MQ=255)

                                                                            gCCCTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTg                <  2:64031/100‑1 (MQ=255)

                                                                             cccTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGc               <  1:2255365/100‑1 (MQ=255)

                                                                             cccTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGc               <  2:696946/100‑1 (MQ=255)

                                                                              ccTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCg              <  1:2507476/100‑1 (MQ=255)

                                                                              ccTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCg              >  1:1099792/1‑100 (MQ=255)

                                                                               cTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGt             <  1:1925111/100‑1 (MQ=255)

                                                                               cTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGt             >  1:1277952/1‑100 (MQ=255)

                                                                               cTGGTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGt             <  2:1646118/100‑1 (MQ=255)

                                                                                tccgatctcTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGtt            <  1:2703696/92‑1 (MQ=255)

                                                                                 ggTTTTACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATGGCGtt            >  2:2929466/1‑99 (MQ=255)

                                                                                   ttttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTATCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTtctc         <  2:795626/100‑1 (MQ=255)

                                                                                   ttttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTtctc         >  1:325565/1‑100 (MQ=255)

                                                                                   ttttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTtct          >  2:191060/1‑99 (MQ=255)

                                                                                    tttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTcc        >  2:3207824/1‑100 (MQ=255)

                                                                                    tttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTcc        <  1:3010387/100‑1 (MQ=255)

                                                                                    tttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTcc        <  2:475667/100‑1 (MQ=255)

                                                                                     ttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCg       <  2:1934142/100‑1 (MQ=255)

                                                                                     ttACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCg       <  1:1695665/100‑1 (MQ=255)

                                                                                      tACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGt      >  1:50346/1‑100 (MQ=255)

                                                                                      tACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGt      <  2:706731/100‑1 (MQ=255)

                                                                                      tACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGt      <  2:394077/100‑1 (MQ=255)

                                                                                      tACTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGt      >  1:2743776/1‑100 (MQ=255)

                                                                                        cTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGttagatcgga    >  2:2703662/1‑92 (MQ=255)

                                                                                        cTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGtat    >  1:2367131/1‑100 (MQ=255)

                                                                                        cTTTATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGtat    <  2:1649257/100‑1 (MQ=255)

                                                                                         tttATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGtata   <  1:1992797/100‑1 (MQ=255)

                                                                                         tttATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGtata   <  1:2424811/100‑1 (MQ=255)

                                                                                          ttATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTatat  >  2:126186/1‑100 (MQ=255)

                                                                                          ttATCCTGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTatat  <  1:581192/100‑1 (MQ=255)

CTTCACCACGTATGCTTTGCGTCACCTTACTATCAGGACGCTTTAGCCCATGTCCCGCTTTTTGATTTGTAGTTTTGCCCTGGTTTTACTTTATCCCGCCGGGATTGATATGTACCTCGTTGGTTTACCGCGCATCGCCGCCGATCTCAATGCCAGCGAAGCGCAGTTGCATATTGCGTTCTCCGTATAT  >  NC_000913/3891566‑3891755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`