| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3087911 | NA (NA) | 7 (0.080) | 4/170 | NT | NA | intergenic (+51/‑373) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913 | = 3087934 | NA (NA) | noncoding (23/26 nt) | REP215 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP215 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3087813‑3087911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGC < NC_000913/3087934‑3087833 AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTG < 1:2130189/100‑1AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTG < 1:369358/100‑1AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTCTCTTTTG < 1:1394993/100‑1 AAACCTACAAATCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTG < 1:2406152/99‑1 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTTATGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG < 1:703266/100‑1 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG < 2:879202/100‑1 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG > 2:749328/1‑100 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG < 2:426755/100‑1 AAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGG > 1:1939294/1‑100 ACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGAT < 2:908736/100‑1 GATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAG < 1:2477650/100‑1 GATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAG < 2:1695789/100‑1 TGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGA < 1:1716105/99‑1 GCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGAAA < 1:1732950/100‑1 CCGGTTTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGG < 1:1542064/100‑1 CCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGG < 1:1582283/100‑1 GTCTGAAGTAATCTTTCTTCATCTGCGTTTAAAGTCCAGCCTCGCGTTTGCATTTTTCTTTTGGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGG < 1:964397/97‑1 GGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCTAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGC < 2:1229644/99‑1 GGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCA > 2:1071305/1‑100 ATGCTGCGTCAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTAGCCTTGGAACGCAGGTGAAGAAAGATTACTTCAGACCGTCAGCATCGCGCAGC < 2:1486572/100‑1 ATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGC < 2:2303383/100‑1 AAAACCGACAAAGCGCAGCTGCTGCGCGATGCTGCCGGTCTGAAGTAATCTTTCTTCACCTGCGTTCAAAGGCCAGCCTCGCGCTGGCCTTTTTCTTTTggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3087813‑3087911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGCGGCGTGAACGCCTATCCAAAAGAAAAAGGCCAGCGCGAGGCTGGCCTTTGAACGCAGGTGAAGAAAGATTACTTCAGACCGGCAGCATCGCGCAGC < NC_000913/3087934‑3087833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |