New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3101756	NA (NA)	5 (0.060)	5/164	NT	NA	noncoding (61/79 nt)	REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 3101767	NA (NA)					noncoding (72/79 nt)	REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences

AGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3101651‑3101756 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATC  <  NC_000913/3101767‑3101672                                                                                                                                                                                                            AGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGG                                                                                                        >  2:1810712/1‑100   CATTTGCTGGCTCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCC                                                                                                      <  1:492409/100‑1   CATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCC                                                                                                      <  1:221927/100‑1   CATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCC                                                                                                      <  2:2644757/100‑1    ATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCT                                                                                                     <  1:2573454/100‑1     TTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCAACGTAAACAACTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTG                                                                                                    >  1:73682/1‑100       TGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT                                                                                                  <  2:1120208/100‑1                        TAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGG                                                                                 <  1:2446778/100‑1                             AAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGCCTGG                                                                            <  2:106111/100‑1                              AGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGCCTGGA                                                                           <  1:1440428/100‑1                                 ACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGCCTGGAAAG                                                                        <  2:1096808/100‑1                                      TTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATGCGCTACGCTTATCAGGCCTGGAAAGATGCA                                                                   <  1:1844040/100‑1                                                                                                     CCTGATGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTA    <  2:2006649/100‑1                                                                                                       TGATGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATC  >  1:1545404/1‑100                                                                                                       TGATGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATC  >  1:2636464/1‑100                                                                                                       TGATGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATC  <  2:2055741/100‑1                                                                                                                                                                                                            AGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3101651‑3101756 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATC  <  NC_000913/3101767‑3101672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.