New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3116734	78 (0.800)	15 (0.170)	7/164	NT	16.9%	coding (2379/4563 nt)	sslE	putative secreted and surface‑associated lipoprotein mucinase
	?	NC_000913	= 3116744	76 (0.850)					coding (2369/4563 nt)	sslE	putative secreted and surface‑associated lipoprotein mucinase

ATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3116629‑3116734 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtgCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAGC  <  NC_000913/3116744‑3116647                                                                                                                                                                                                              ATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCG                                                                                                          >  1:1410322/1‑100   CTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGAT                                                                                                        >  2:376139/1‑100   CTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTCTTTTCTACCAGATATGTCCACTTAGCTTCCCCTGTCTTACTATCGAT                                                                                                        >  2:1790567/1‑100    TACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATG                                                                                                       >  2:922173/1‑100     ACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGG                                                                                                      <  1:1103326/100‑1     ACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGG                                                                                                      <  1:1614756/100‑1     ACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGG                                                                                                      <  2:1839595/100‑1      CATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCAACTTAACTTCCCCTGTCTTACTATCAATGGT                                                                                                     >  1:983524/1‑100       ATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTG                                                                                                    <  1:131320/100‑1       ATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTG                                                                                                    <  2:1385269/100‑1       ATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCACCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTG                                                                                                    <  2:1733660/100‑1                        CAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATC                                                                                   <  2:279054/100‑1                        CAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATC                                                                                   <  2:2205266/100‑1                         AACTTCCTGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATC                                                                                   <  1:455780/99‑1                         AACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCG                                                                                  <  1:2318167/100‑1                         AACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCG                                                                                  <  1:161726/100‑1                         AACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCG                                                                                  <  1:1073999/100‑1                         AACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCG                                                                                  <  1:1039457/100‑1                          ACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATC                                                                                   <  2:201845/98‑1                           CTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCGAT                                                                                <  2:1670026/100‑1                           CTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCGAT                                                                                <  2:1938978/100‑1                            TTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCGATA                                                                               <  2:549982/100‑1                            TTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCGAT                                                                                <  2:2058071/99‑1                             TCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCGATAG                                                                              <  2:925558/100‑1                                      GGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATAGATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGG                                                                     <  1:1260861/100‑1                                                                   ATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAA                                        <  1:2620454/100‑1                                                                                               CTATCGATGGTGTACGGCAGCGCACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGA            >  1:1002657/1‑100                                                                                                    GATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTG       >  2:1584631/1‑100                                                                                                    GATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTG       <  2:2145121/100‑1                                                                                                    GATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTG       >  2:480884/1‑100                                                                                                     ATGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTG       >  1:176298/1‑99                                                                                                      TGGTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCC     >  1:397103/1‑100                                                                                                        GTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAG   <  2:2005364/100‑1                                                                                                        GTGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAG   >  1:1741127/1‑100                                                                                                         cGCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAGC  >  2:501919/2‑100                                                                                                         TGCGCTGCCGTACACCATCGATGGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAGC  <  2:194434/100‑1                                                                                                          GCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTAAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAG   >  2:353080/1‑98                                                                                                                                                                                                              ATCTACATCTTCCAGCCAGCTGGCAACTTCCAGCTTCGGTTTGTCATCAGGTTTGTTTTCTACCTGATATTTCCACTTAACTTCCCCTGTCTTACTATCGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3116629‑3116734 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtgCGCTGCCGTACACCATCGATAGTAAGACAGGGGAAGTTAAGTGGAAATATCAGGTAGAAAACAAACCTGATGACAAACCGAAGCTGGAAGTTGCCAGC  <  NC_000913/3116744‑3116647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.