New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3592644	NA (NA)	4 (0.040)	4/164	NT	NA	noncoding (81/99 nt)	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3592655	NA (NA)					noncoding (92/99 nt)	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

CTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3592541‑3592644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgat‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAA  <  NC_000913/3592655‑3592559                                                                                                                                                                                                             CTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCC                                                                                                         <  2:221538/100‑1  TACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCT                                                                                                        <  1:64983/100‑1   ACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTG                                                                                                       <  2:1079054/100‑1   ACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTAACACTCACCCAGTAGGCCTG                                                                                                       <  2:879395/100‑1   ACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCATGCAAATTCAACATATTGCCACTCAACCAGTAGGCCT                                                                                                        >  1:1899935/1‑99    cgcatgtgTCATCATTTCATGCCGGATGCGGCGTAAACGCCTGATCAGGCCTACAAGATCGTGCAAATTCAACATATGGCCACTCACCCAGTAGGCCTG                                                                                                       <  2:2258316/91‑1    CAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGA                                                                                                      >  1:368095/1‑100                       TGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT‑‑GCGCTGCGCTTATCAGGC                                                                                 <  1:853414/100‑1                        GCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT‑‑GCGCTGCGCTTATCAGGCC                                                                                <  1:751328/100‑1                                                                              TATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGG                          >  2:607384/1‑100                                                                                        CACCCAGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCC                >  2:547692/1‑100                                                                                                   CCTGAT‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCAT     <  1:672256/100‑1                                                                                                    CTGAT‑‑GCGCTGCTCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATG    <  1:1675566/100‑1                                                                                                    CTGAT‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATG    >  1:572054/1‑100                                                                                                    CTGAT‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATG    <  1:2434910/100‑1                                                                                                    CTGAT‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCAT     >  2:1031591/1‑99                                                                                                     TGAT‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGA   <  2:2054553/100‑1                                                                                                      GAT‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAA  >  2:2222635/1‑100                                                                                                                                                                                                             CTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3592541‑3592644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgat‑‑GCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAATATGTTGAATTTGCACGATCTTGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATGAA  <  NC_000913/3592655‑3592559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.