New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4488511	NA (NA)	9 (0.100)	4/170	NT	NA	noncoding (7/36 nt)	REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4488537	NA (NA)					noncoding (33/36 nt)	REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP343 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAtgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4488413‑4488511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAT  <  NC_000913/4488537‑4488437                                                                                                                                                                                                          ATAAAGGGAGCTTTCGCTCCCTTTATTATTGTTAGCAAAGAGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAT                                                                                                      >  2:912875/1‑100  TAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATG                                                                                                     <  2:1077700/100‑1  TAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATG                                                                                                     <  2:685015/100‑1  TAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATG                                                                                                     >  1:963566/1‑100  TAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATG                                                                                                     <  1:1552352/100‑1  TAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATG                                                                                                     <  1:111782/100‑1    AAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGAT                                                                                                   >  1:2147309/1‑100    AAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTAGGGTGGGCATGAT                                                                                                   >  1:2577630/1‑100    AAGAGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGAT                                                                                                   <  2:455695/100‑1                        TATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTAT                                                                               <  1:1405193/100‑1                        TATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTAT                                                                               <  2:244214/100‑1                        TATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAAAATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTAT                                                                               <  2:1352727/100‑1                             TTGTTAGCAAAGTGTGCTTCGTTTATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGC                                                                          <  1:962862/100‑1                             TTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGC                                                                          <  1:1210392/100‑1                             TTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGC                                                                          <  2:430118/100‑1                             TTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATAAGACGCTGGCGCGTCTTATCATGC                                                                          <  2:740864/100‑1                               GTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGCCC                                                                        <  1:2018396/100‑1                                    CAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCATGATGCGACGCTGGCGCGTCTTATCATGCCCACCCC                                                                   <  1:1100381/100‑1                                                                                                    TGATGTGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATA    <  1:2590181/99‑1                                                                                                     GATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAn  <  2:2456958/100‑2                                                                                                     GATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAT  <  2:1952764/100‑1                                                                                                     GATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAT  <  2:1462425/100‑1                                                                                                                                                                                                          ATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCAATATATTGCAGTGGGGTGGGCAtgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4488413‑4488511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATGCGACGCTGGCGCGTCTTATCATGCCCACCCCACTGCAATATATTGAATTTTAATTATTTTTCAGGAATGAACGAAGCACACTTTGCTAACAATAAT  <  NC_000913/4488537‑4488437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.