New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4587871 =	NA (NA)	7 (0.080)	5/162	NT	NA	intergenic (+8/+38)	mrr/yjiA	methylated adenine and cytosine restriction protein/metal‑binding GTPase
	?	NC_000913	4587900 =	NA (NA)					intergenic (+37/+9)	mrr/yjiA	methylated adenine and cytosine restriction protein/metal‑binding GTPase

TGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4587973‑4587871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggccCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCAT  >  NC_000913/4587900‑4587997                                                                                                                                                                                                           TGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCG                                                                                                       >  1:535370/1‑100  GTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGTTAAGGCGCAGCCGCATCCGG                                                                                                      <  2:1614445/100‑1   TTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                                     >  1:2351105/1‑100   TTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                                     <  2:1094532/100‑1     TATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATGCGGCTGCGCCTTATCCGGCCC                                                                                                   <  2:1942499/100‑1                                                              GTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGC                                          >  1:660562/1‑100                                                                           GGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCTGAATCTCTTCCTCCGGCAGCTGGATCCCGATAA                             >  2:658268/1‑100                                                                           GGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCTGAATCTCTTCCTCCGGCAGCTGGATCCCGATAA                             >  2:55195/1‑100                                                                           GGCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAA                             >  2:198151/1‑100                                                                            GCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAA                            >  1:1405183/1‑100                                                                            GCCGGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAA                            >  1:1152372/1‑100                                                                               GGATAAGGCGCAGCCGCATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACAC                         >  1:1484726/1‑100                                                                                                 TCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTT       >  1:2106604/1‑100                                                                                                  CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTT      <  2:1024104/100‑1                                                                                                  CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTT      <  1:694477/100‑1                                                                                                  CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTT      <  2:234177/100‑1                                                                                                  CCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTT      >  2:809770/1‑100                                                                                                     GCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCA   <  2:1126092/100‑1                                                                                                     GCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCA   <  2:806589/100‑1                                                                                                      CCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAATCACCATCGTGCTATGCGGTTTTTCAT  <  1:1614461/100‑1                                                                                                       CCATAACCCCTTACTTCCTCAACCCCTCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTC    <  2:993071/97‑1                                                                                                                                                                                                           TGTTTATCGGGATCCAGCTGCCGGAGGAAGAGATTCGGGCTGCGTTTGCGGGGTTGAGGAAGTAAGGGGTTATGGGCCGGATAAGGCGCAGCCGCATCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4587973‑4587871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggccCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGCGGTTTTTCAT  >  NC_000913/4587900‑4587997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.