New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 315646	NA (NA)	13 (0.140)	9/168	NT	NA	noncoding (418/1255 nt)	IS3	repeat region
	?	NC_000913	= 315665	NA (NA)					noncoding (437/1255 nt)	IS3	repeat region

GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/315543‑315646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcc‑‑‑‑gcTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  <  NC_000913/315665‑315567                                                                                                                                                                                                                 GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTG                                                                                                             <  2:338882/100‑1  CTATCCTCCAAAAGGCCGCGACATACTTCGCGATGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                                                                                            >  2:1753366/1‑100  CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGACATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                                                                                            <  2:1857470/100‑1  CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGGAAAACATCAGGCTGTGTTCAGCATCAAAGCAATGTGC                                                                                                            >  2:1788663/1‑100  CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                                                                                            <  2:346463/100‑1  CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTCTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATATGC                                                                                                            >  2:2557408/1‑100   TATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                                                                                           >  2:192640/1‑100   TATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                                                                                           <  2:1856220/100‑1    nTCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                                                                                      >  2:819937/2‑100    ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                                                                                      <  2:1273727/100‑1    ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                                                                                      <  1:1238204/100‑1    ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                                                                                      <  1:1567410/100‑1    ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                                                                                      >  1:1691392/1‑100    ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                                                                                           >  2:933584/1‑99    ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGACTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                                                                                      >  1:850894/1‑100     TCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                                                                                     <  1:380250/100‑1     TCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAAGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                                                                                     >  1:716678/1‑100       CTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAAAATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCacgt                                                                                                       >  1:846593/1‑96          CAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGG                                                                                                >  2:1020902/1‑100                               GCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTGCGGGCCACCCGGAGCACGCG                                                                               <  1:1441039/100‑1                               GCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCAC                                                                           <  1:2192102/100‑1                                CGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCAC                                                                           <  1:1009217/99‑1                                 GAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACAT                                                                         <  1:867292/100‑1                                 GAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACA                                                                          <  1:2556196/99‑1                                 GAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACAGCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGTCACCCGGAGCACGCGGCACAT                                                                         <  2:2273434/100‑1                                  AAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑ACTGCGGGCCACCCGGAACACGCGGCACATT                                                                        <  2:1557047/100‑1                                   AGCGCCTGAAATGAATTATGTCTTTATTGAAAAACATCATGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACACGGAGCACGCGGCACAT                                                                         <  2:2389918/98‑1                                   AGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTG                                                                       <  1:1020912/100‑1                                   AGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTG                                                                       <  1:1964321/100‑1                                    GCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCCCCCGGAGCACGCGGCACATTGC                                                                      <  1:2562840/100‑1                                               GAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGA                                                           <  1:701992/100‑1                                                       TCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑‑‑‑GCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGA                                                <  1:1172248/100‑1                                                                                                    GCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGA      <  2:237589/100‑1                                                                                                    GCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGA      <  2:1674279/100‑1                                                                                                    GCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGA      >  2:1112735/1‑100                                                                                                    GCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGC        >  2:1605532/1‑98                                                                                                     CC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAA     <  2:1018129/100‑1                                                                                                     CC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAA     <  2:1611334/100‑1                                                                                                     CC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTAAATAAAGACATACTTCATTTCAGGCGCTTCGCGAA     >  1:1734939/1‑100                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGTTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:522444/100‑1                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGCTGCTTAACTCAGCCTGATGTTTTTCAATAAAGACAAACTACATTTCAGGCGCTTCGCGAA     >  1:1806421/1‑99                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGATCTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:1535925/100‑1                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:1110351/100‑1                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  2:2470380/100‑1                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:47281/100‑1                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    >  2:1678093/1‑100                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    >  2:1125507/1‑100                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    >  2:1756007/1‑100                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:2188321/100‑1                                                                                                      C‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  2:2205422/100‑1                                                                                                        gcaGCTGCGGGTCACCCGGAGCTCGCGGCACATTGCTTTGATGCTGAACTCAGCCTGTTGTTTTTCAATAAAGACATATTTTATTTCAGGCGATTCGCGA      <  2:1223659/97‑1                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGT   <  2:1406675/100‑1                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGT   <  1:414210/100‑1                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGT   <  2:331977/100‑1                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGT   >  1:1534384/1‑100                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGT   >  1:1628236/1‑100                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:476022/99‑1                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  1:915733/99‑1                                                                                                           GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTAATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGT   >  1:1871752/1‑100                                                                                                            CTGCTGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  <  1:2556698/100‑1                                                                                                            CTGCGGGCGACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAG    <  2:2361425/98‑1                                                                                                            CTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  <  1:2487401/100‑1                                                                                                            CTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  >  1:2430020/1‑100                                                                                                            CTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  >  1:2245672/1‑100                                                                                                            CTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  <  1:122971/100‑1                                                                                                            CTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  <  2:1461656/100‑1                                                                                                            CTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  >  2:1376521/1‑100                                                                                                                                                                                                                 GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/315543‑315646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcc‑‑‑‑gcTGCGGGCCACCCGGAGCACGCGGCACATTGCTTTGATGCTGAACTCAGCCTGATGTTTTTCAATAAAGACATACTTCATTTCAGGCGCTTCGCGAAGTA  <  NC_000913/315665‑315567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.