New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 437119	NA (NA)	9 (0.100)	8/162	NT	NA	intergenic (+12/+42)	pgpA/yajO	phosphatidylglycerophosphatase A/2‑carboxybenzaldehyde reductase
	?	NC_000913	= 437152	NA (NA)					noncoding (33/37 nt)	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATgcctgatg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/437021‑437119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAA  <  NC_000913/437152‑437049                                                                                                                                                                                                             ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATG                                                                                                         <  1:2184247/100‑1  TGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGC                                                                                                        >  1:1899406/1‑100   GATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCC                                                                                                       >  2:2391062/1‑100     TCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTG                                                                                                     <  2:886403/100‑1     TCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTG                                                                                                     <  1:2573269/100‑1       GACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGAT                                                                                                   <  1:1211330/100‑1       GACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGAT                                                                                                   >  1:1317268/1‑100        ACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATG                                                                                                  <  2:266678/100‑1        ACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATG                                                                                                  <  1:816529/100‑1         CGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATG                                                                                                  <  1:1282962/99‑1          GATATTGTCGCCGGTGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATG                                                                                                  <  1:675877/98‑1                             TTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATC                                                                             >  2:2200186/1‑100                              TTCCGCAGGCATCCTGTATTTTATCGGTTATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCA                                                                            <  1:292511/100‑1                              TTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCA                                                                            <  1:2200213/100‑1                                CCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                           >  1:545282/1‑99                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGC                                                                         <  1:67974/100‑1                                 CGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                          <  2:1234181/99‑1                                      GCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGG                                                                    <  1:1568299/100‑1                                        ATCCTGTATTTTATCGGTCATCACTGGCCGCTGTGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGT                                                                   <  2:366998/99‑1                                         TCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGC                                                                 <  2:545278/100‑1                                                                                                     CCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGG     >  1:2185514/1‑100                                                                                                      CTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGA    >  1:2171711/1‑100                                                                                                       TGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAA   <  2:2603345/100‑1                                                                                                        GATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAA  <  2:884874/100‑1                                                                                                                                                                                                             ATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATgcctgatg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/437021‑437119 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGAGACGTGACAAGCGTCACATCAGGCATCGGTGCACAACTACGACAGAATACCCAGCGGCCAGTGATGACCGATAAAATACAGGATGCCTGCGGAAA  <  NC_000913/437152‑437049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.