| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1167402 = | NA (NA) | 11 (0.120) | 7/162 | NT | NA | noncoding (1/30 nt) | REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1167432 = | NA (NA) | intergenic (+43/‑167) | ndh/ycfJ | respiratory NADH dehydrogenase 2/cupric reductase/uncharacterized protein | |||||
GGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1167507‑1167402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC > NC_000913/1167432‑1167529 cGAAATACTTAACGATTCGGAGGAGACTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAACGGCGGATGAGGCGTTTATGCCACA > 2:533948/2‑100 ACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCG < 2:2546639/98‑1 GCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCC > 1:152726/1‑100 AGGGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTACAGACTCCTCAGAATCCTTAA > 1:2374324/1‑100 GGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGT > 1:953666/1‑100 GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTA > 1:469917/1‑100 GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTA > 1:588078/1‑100 GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTA > 1:2077705/1‑100 CGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAT > 1:72957/1‑100 GGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATT > 2:1073526/1‑100 GGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATT > 2:316540/1‑100 GATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTT > 2:2100333/1‑100 GATGAGGCGTTTATGCCACATCCGCACTTGAGAAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACCCCTCCGACTCCTTAAGTATTT > 2:1708996/1‑100 ACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCT < 2:588074/100‑1 CATCCGCCCTTGAGGAACAGGGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTT > 2:1615901/1‑100 CATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTT > 2:687062/1‑100 TCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTT < 1:1346264/100‑1 CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCA < 2:2475734/100‑1 CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCAATTCCCGCGCTTTTCA > 1:450522/1‑100 CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAAGCATCCTTTCAAACACCTCCGAAACCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCA < 1:2208821/100‑1 GCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAT < 2:1455596/100‑1 GCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAT > 1:2166079/1‑100 GCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCA < 2:990496/99‑1 CCTTGAGGAACAGCGCGATCGGCAGCCTTGTTGTATCAGGCATCCTTTCAGACTCCTCCTAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC < 2:935749/99‑1 GGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1167507‑1167402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC > NC_000913/1167432‑1167529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |