| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2169619 = | NA (NA) | 7 (0.080) | 5/166 | NT | NA | intergenic (+8/+74) | yegS/gatR | phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | NC_000913 | 2169643 = | NA (NA) | intergenic (+32/+50) | yegS/gatR | phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted | |||||
GAAGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2169723‑2169619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaatCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC > NC_000913/2169643‑2169740 GAAGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAG < 2:421438/100‑1GAAGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGACGGATAAGGTATATACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAG > 1:236480/1‑100 AAGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGA < 2:196232/100‑1 AAGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGACATTACGGATTCTCCCTGGTTCAAGAGA < 1:658798/100‑1 AGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAG < 1:1831484/100‑1 CGCGGGTAAAATTAATTACGGTTTAGTATTGTTTTGTATGCTGGATAAGGTGTTTACACCGCAACCGGCATTACGGATTCTCCCTGGTTCAAGAGAG < 1:487619/97‑1 CGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT < 2:1795728/100‑1 CGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT < 1:494678/100‑1 GCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGGATCGGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT < 2:2187397/99‑1 AAATTAATTACGGTGTAGTATTGTTTTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCTCTTGAACCAGGGAGAATCCGTAATG < 1:1183665/100‑1 AATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCTCTTGAACCAGGGAGAATCCGTAATGC < 2:2009483/100‑1 TACGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTAC > 1:2449930/1‑100 TACGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTA > 1:1247511/1‑99 CGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCC > 1:2469101/1‑100 CGGATTCTCCCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCC > 1:2394019/1‑100 CCTGGTTCAAGAGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCT > 1:731848/1‑100 GAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTT < 1:1588210/100‑1 GAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTA < 2:2082517/100‑1 ATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC < 1:1853701/100‑1 ATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC > 2:235298/1‑100 ATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC > 2:924774/1‑100 ATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCACGTCTTATGAAATGCCAGTTTATC > 1:1146160/1‑100 ATCCATAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACATCGTAATTAATTTTACCCGCGTCTTCTGCTATGCCAGTTTATC < 1:1789703/100‑1 GAAGACGCGGGTAAAATTAATTACGGTGTAGTATTGTTCTGTATGCCGGATAAGGTGTTTACACCGCATCCGGCATTACGGATTCTCCCTGGTTCAAGAGAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2169723‑2169619‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagaatCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGTTTATC > NC_000913/2169643‑2169740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |