New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620220NA (NA)10 (0.110) 5/166 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTT  >  NC_000913/3620130‑3620318
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ccagccatagcgcaccaGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGAtg                                                                                           >  2:2613941‑M2/18‑100 (MQ=255)
                 GCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCacac                                                                          >  1:2007737‑M2/1‑100 (MQ=255)
                   GGCGAACTGGCGGCGGTGTATGACCGCAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACgg                                                                        >  1:1519797‑M2/1‑100 (MQ=255)
                    GCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACggg                                                                       <  1:1979‑M2/100‑1 (MQ=255)
                     CGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGc                                                                      <  1:314690‑M2/100‑1 (MQ=255)
                     CGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGc                                                                      <  1:2067935‑M2/100‑1 (MQ=255)
                     CGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCCGGGCCGGATGGTGGCGCACCGTCACACGGGc                                                                      >  1:1230200‑M2/1‑100 (MQ=255)
                      GAACTGGCGGTGGTGTATGACTGTAGTGGTAAACAGGTGCGCAGTTTTACTCACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGc                                                                      <  1:618755‑M2/99‑1 (MQ=255)
                      GAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCAGGGCCGGATGGTGGCGCACCGTCACACGGGcc                                                                     >  1:1730971‑M2/1‑100 (MQ=255)
                       aaCTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCG                                                                    <  1:1487280‑M2/100‑1 (MQ=255)
                         ntgGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGC                                                                  <  2:638365‑M2/99‑1 (MQ=255)
                         cTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGC                                                                  <  1:768053‑M2/100‑1 (MQ=255)
                         cTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGC                                                                  <  2:1848451‑M2/100‑1 (MQ=255)
                         cTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGC                                                                  <  2:2307819‑M2/100‑1 (MQ=255)
                          tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                 <  1:1410175‑M2/100‑1 (MQ=255)
                          tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                 >  1:957271‑M2/1‑100 (MQ=255)
                          tGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCC                                                                 >  1:1095097‑M2/1‑100 (MQ=255)
                                                                             atgatAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtc              <  1:1278778‑M2/100‑52 (MQ=255)
                                                                                       ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc    <  1:2204222‑M2/100‑62 (MQ=255)
                                                                                       ccGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccacc    <  1:2579333‑M2/100‑62 (MQ=255)
                                                                                         ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc  <  2:869772‑M2/100‑64 (MQ=255)
                                                                                         ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc  <  2:1653932‑M2/100‑64 (MQ=255)
                                                                                         ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaagctgcgcacctgtttgccactacggtcatacaccaccgc  <  1:823112‑M2/100‑64 (MQ=255)
                                                                                         ggggCCGGATGGTGGCGCACCGTCACACGGGCCGGCCccggtatttatcatcgtaagtaaaactgcgcacctgtttgccactacggtcatacaccaccgc  <  1:824012‑M2/100‑64 (MQ=255)
                                                                                          |                                                                                                  
CTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTT  >  NC_000913/3620130‑3620318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.