New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3908420NA (NA)5 (0.060) 4/164 NT NA noncoding (34/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3908450 NA (NA)noncoding (64/64 nt) REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences REP283 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 143 total aligned reads displayed.

AATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTT  >  NC_000913/3908321‑3908519
                                                                                                   |                                                                                                   
aaTTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATACACTTCGCTAATCAGGCTTACCGTAg                                                                                                     >  1:332918/1‑100 (MQ=255)
  ttACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACTGTAGgc                                                                                                   >  1:229469‑M1/1‑98 (MQ=255)
   tACGAACCTGAATTTTACTCGGGTCAGTTTTAACCATACTCATTGTAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgcc                                                                                                  <  1:672849‑M1/100‑4 (MQ=255)
     cGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccgg                                                                                                <  1:2109292‑M1/100‑6 (MQ=255)
     cGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccgg                                                                                                >  2:426822‑M1/1‑95 (MQ=255)
       aaCCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccggat                                                                                              <  1:753926‑M1/100‑8 (MQ=255)
         ccTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCa                                                                                            <  1:729417/100‑1 (MQ=255)
          cTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccggatgcg                                                                                           <  1:2377994‑M1/100‑11 (MQ=255)
          cTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATc                                                                                             <  2:1214583/98‑1 (MQ=255)
          cTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAg                                                                                           >  2:2528653/1‑100 (MQ=255)
          cTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAg                                                                                           <  1:1721580/100‑1 (MQ=255)
          cTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGATAATCAGGCTTACCGTAGGCCGGATCAg                                                                                           >  2:1171006/1‑100 (MQ=255)
           tGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAgg                                                                                          >  2:2177130/1‑100 (MQ=255)
           tGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAgg                                                                                          <  1:1417787/100‑1 (MQ=255)
           tGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAgg                                                                                          >  2:727648/1‑100 (MQ=255)
             aaTTTTACTCGGGGTAGTTTCAACCATACTCATTGCTATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCg                                                                                        <  1:1580119/100‑1 (MQ=255)
             aaTTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCg                                                                                        <  1:979688/100‑1 (MQ=255)
             aaTTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCg                                                                                        <  1:1395206/100‑1 (MQ=255)
              aTTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCg                                                                                        >  1:1318452/1‑99 (MQ=255)
                tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTc                                                                                     <  1:1097655/100‑1 (MQ=255)
                tttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTc                                                                                     <  2:769047/100‑1 (MQ=255)
                 ttACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCa                                                                                    <  1:2112071/100‑1 (MQ=255)
                   aCTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcg                                                                                  >  1:1121170/1‑100 (MQ=255)
                    cTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgc                                                                                 <  2:581373/100‑1 (MQ=255)
                    cTCGGGGCAGTTACAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgc                                                                                 >  1:1737904/1‑100 (MQ=255)
                      cGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCATGCCTAATGCACTTCGCTAATCAGGATTACCATAGGCCGGATCAGGCGTTCAcgccg                                                                               >  1:703764/1‑100 (MQ=255)
                       ggggCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgccgc                                                                              >  1:2068547/1‑100 (MQ=255)
                       ggggCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCAcgccgc                                                                              <  2:911157/100‑1 (MQ=255)
                         ggCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCAT                                                                            <  2:2329334‑M2/100‑1 (MQ=255)
                             gTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccggatgcggcgtgaacgcctgatccgg                                                                        <  2:463444‑M1/100‑30 (MQ=255)
                             gTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGG                                                                        <  1:1403728‑M2/100‑1 (MQ=255)
                              tttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCCCTTCGCTAATCAGGCTTACCGTAGgccggatgcggcgtgaacgcctgatccggc                                                                       <  1:2518702‑M1/100‑31 (MQ=255)
                              tttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccggatgcggcgtgaacgcctgatccggc                                                                       <  1:219070‑M1/100‑31 (MQ=255)
                              tttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGC                                                                       >  1:2652971‑M2/1‑100 (MQ=255)
                              atctaaccatACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGC                                                                       >  1:1844625‑M2/5‑100 (MQ=255)
                               ttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccggatgcggcgtgaacgcctgatccggcc                                                                      <  1:1239308‑M1/100‑32 (MQ=255)
                               ttCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCa                                                                      >  1:1354111/1‑100 (MQ=255)
                                 cAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCaaa                                                                    >  1:871556/1‑100 (MQ=255)
                                  aaCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCagat                                                                   >  2:1844608/1‑97 (MQ=255)
                                  aaCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAg                                                                   >  1:894366/1‑100 (MQ=255)
                                  aaCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAg                                                                   >  1:2559941/1‑100 (MQ=255)
                                   aCCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGgccggatgcggcgtgaacgcctgatccggcctacg                                                                  <  1:470097‑M1/100‑36 (MQ=255)
                                    ccATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAgtg                                                                 >  1:2527790/1‑100 (MQ=255)
                                       tACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTa                                                              >  1:2313783/1‑100 (MQ=255)
                                         cTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAAc                                                            >  1:1702035/1‑100 (MQ=255)
                                          tCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGTCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAAcc                                                           >  2:1199615/1‑100 (MQ=255)
                                            aTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGTAACAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgt                                                         >  1:984271/1‑100 (MQ=255)
                                            aTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgt                                                         >  2:811580/1‑100 (MQ=255)
                                            aTTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgt                                                         >  1:641595/1‑100 (MQ=255)
                                             ttGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCgtg                                                        >  1:1651317/1‑100 (MQ=255)
                                                cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                                                     >  2:1725814/1‑100 (MQ=255)
                                                cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                                                     >  1:2201595/1‑100 (MQ=255)
                                                cAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTAc                                                     >  1:1462069/1‑100 (MQ=255)
                                                 aaTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACa                                                    <  1:100716/100‑1 (MQ=255)
                                                  aTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACag                                                   >  1:597843/1‑100 (MQ=255)
                                                  aTCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACag                                                   >  1:1667485/1‑100 (MQ=255)
                                                    cTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTaagatc                                                 >  1:471067/1‑95 (MQ=255)
                                                    cTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACagag                                                 <  2:2182231/100‑1 (MQ=255)
                                                     ttttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACagag                                                 >  1:1972045/1‑99 (MQ=255)
                                                      tttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACTCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTc                                               <  2:562751/100‑1 (MQ=255)
                                                      tttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTc                                               <  2:322486/100‑1 (MQ=255)
                                                      tttCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTc                                               <  2:894357/100‑1 (MQ=255)
                                                         ccTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaa                                            <  2:1831162/100‑1 (MQ=255)
                                                         ccTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaa                                            <  2:1831404/100‑1 (MQ=255)
                                                         ccTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCaaa                                            >  2:659018/1‑100 (MQ=255)
                                                             ggtaagcctgattagcgaagtgcatcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAgg                                        >  1:2523532‑M2/31‑100 (MQ=255)
                                                             aTCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAgg                                        >  1:138390/1‑100 (MQ=255)
                                                              gtaagcctgattagcgaagtgcatcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgc                                       >  1:1470175‑M2/30‑100 (MQ=255)
                                                               taagcctgattagcgaagtgcatcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgcg                                      >  2:294760‑M2/29‑100 (MQ=255)
                                                               cGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTGACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGgcg                                      >  2:923510/1‑100 (MQ=255)
                                                                 tGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCt                                    <  2:950556/100‑1 (MQ=255)
                                                                  gcctgattagcgaagtgcatcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCtc                                   >  1:1923512‑M2/26‑100 (MQ=255)
                                                                  gcctgattagcgaagtgcatcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCtc                                   >  2:1716940‑M2/26‑100 (MQ=255)
                                                                   CCTGATGCACTTCGCTAATCAGGCTTACCGTATGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCtcg                                  >  1:493133‑M1/1‑100 (MQ=255)
                                                                     TGATTCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCAGCCGGCAAAGTATTAACCGTGTACAGAGTCAAAAAGGCGCtcggt                                >  1:512327‑M1/1‑100 (MQ=255)
                                                                     TGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCtaggt                                <  1:1576236‑M1/100‑1 (MQ=255)
                                                                         gCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTcggtcggt                            >  2:1199365/1‑100 (MQ=255)
                                                                           aCTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTcc                          <  2:2068525/100‑1 (MQ=255)
                                                                            cTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTccc                         >  2:1798498/1‑100 (MQ=255)
                                                                            cTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTccc                         >  2:693579/1‑100 (MQ=255)
                                                                             ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTcccc                        >  2:2036604/1‑100 (MQ=255)
                                                                             ttCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGACAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTaccc                        >  1:1946245/1‑100 (MQ=255)
                                                                               cGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTc                      <  2:1511927/100‑1 (MQ=255)
                                                                                  tAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGcc                   <  2:1848406/100‑1 (MQ=255)
                                                                                  tAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGcc                   <  2:2466852/100‑1 (MQ=255)
                                                                                    atcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGcccc                 <  1:1134954‑M2/93‑1 (MQ=255)
                                                                                    atcaggcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGcccc                 >  1:596545‑M2/8‑100 (MQ=255)
                                                                                     tcaggcTTACCGTTGGCCGGATCAGGCGTTCACGCCGCGTCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGcccc                 >  2:1636988‑M2/7‑99 (MQ=255)
                                                                                         gcTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCcctctccccagagg            <  2:841427‑M2/98‑6 (MQ=255)
                                                                                          cTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTggg           <  2:482532‑M2/99‑1 (MQ=255)
                                                                                           ttACTGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTgggg          <  2:229467/100‑1 (MQ=255)
                                                                                           ttACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTgggg          <  2:49952/100‑1 (MQ=255)
                                                                                           ttACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTgggg          <  2:706182/100‑1 (MQ=255)
                                                                                            tACCGTACGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTggg           >  2:1256575/1‑98 (MQ=255)
                                                                                              ccGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGgaga       <  1:2329363/100‑1 (MQ=255)
                                                                                               cGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGagag      <  2:1923494/100‑1 (MQ=255)
                                                                                                gTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAgg     >  2:2512857/1‑100 (MQ=255)
                                                                                                 tAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAggg    <  1:1280750/100‑1 (MQ=255)
                                                                                                   ggCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt  >  1:2221067/1‑100 (MQ=255)
                                                                                                   ggCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGtt  >  2:542826/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AATTACGAACCTGAATTTTACTCGGGGCAGTTTCAACCATACTCATTGCAATCTTTTCCTCATCGTGCCTGATGCACTTCGCTAATCAGGCTTACCGTAGGCCGGATCAGGCGTTCACGCCGCATCCGGCAAAGTGTTAACCGTGTACAGAGTCAAAAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGGAGAGGGTT  >  NC_000913/3908321‑3908519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.