New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	227034 =	NA (NA)	19 (0.210)	11/166	NT	NA	noncoding (1276/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	227053 =	NA (NA)					noncoding (1295/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon

GCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAA  >  NC_000913/226935‑227086                                                                                                    |                                                     gCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATaaa                                                      >  2:2529416/1‑100 (MQ=40)  cGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGATAACAAAAGTAACGATAAAg                                                     >  1:153622/1‑100 (MQ=255)  cGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGAATGCAAGAAATATAAGAAGTGCGAATGCTGACATAAGTAACGATAAAg                                                     >  1:690878/1‑100 (MQ=11)   gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGc                                                    >  1:2255425/1‑100 (MQ=38)     tgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                  <  1:1933209/100‑1 (MQ=38)        tgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGTGAATGCTGACATAAGTAACGATAAAGCGGGTg                                               <  2:520275/100‑1 (MQ=255)        tgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg                                               >  2:383420/1‑100 (MQ=38)         gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGa                                              >  1:2106302/1‑100 (MQ=38)           gTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaa                                            >  1:1421421/1‑100 (MQ=38)             aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                          <  2:774509/100‑1 (MQ=38)             aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                          <  1:1289014/100‑1 (MQ=38)             aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACGGTGAAGTATGCTGGAAGTATCAGAAGTGCGAATGCTGACATAAGTAACGATCAAGCGGGTGAAAAg                                          <  2:360580/100‑1 (MQ=11)              ggggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc                                         >  1:1809657/1‑100 (MQ=38)               gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcc                                        >  2:2425121/1‑100 (MQ=38)                ggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGTAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc                                       <  1:1526982/100‑1 (MQ=38)                ggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc                                       >  2:1314668/1‑100 (MQ=38)                ggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcc                                        >  1:2024507/1‑99 (MQ=38)                 gAGCGTTCTGTAAGCCTGTGAAGGTGTCCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc                                       >  1:512323/1‑99 (MQ=17)                 gAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCg                                      <  1:1649656/100‑1 (MQ=38)                 gAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCg                                      >  1:223931/1‑100 (MQ=38)                 gAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCg                                      >  1:1561891/1‑100 (MQ=38)                   gCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGc                                     >  2:303960/1‑99 (MQ=35)                   gCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCt                                    <  1:1448310/100‑1 (MQ=38)                   gCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCt                                    >  1:733093/1‑100 (MQ=38)                        cTGTAAGCCTGTGAAGGTGTACTGAGAGGTATGATGGAGGTATCAGAAGTGCGAATGCTGATATAAGTAACGAGAAAGCGGGTGAAAAGCCCGCTAGCCg                               >  2:1845152/1‑100 (MQ=11)                         tGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg                              <  2:650668/100‑1 (MQ=38)                         tGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACAATAAAGCGGGTGAAAAGCCCGCTCGcc                                >  1:603412/1‑98 (MQ=255)                          gTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                             >  2:1710993/1‑100 (MQ=38)                           tAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                            >  2:925406/1‑100 (MQ=38)                           tAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAATAACGATAAAGAGGGTGAAAAGCCCGCTCGCCGGaa                            >  1:889428/1‑100 (MQ=255)                            aaGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg                           <  1:2004695/100‑1 (MQ=35)                            aaGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg                           <  2:2255398/100‑1 (MQ=38)                            aaGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg                           <  2:223929/100‑1 (MQ=38)                             aGCCTGTGAAGGTGTACTGTGAGGTATGTTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg                           <  1:746620/99‑1 (MQ=25)                                cTGTGAAGGGGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGGGGGTGAAAAGCCCGCCCGCCGGAAGa                          >  2:665676/1‑97 (MQ=255)                                 tgtgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGACGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                      >  2:911938/1‑100 (MQ=38)                                 tgtgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                      >  2:2508/1‑100 (MQ=38)                                  gtgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                     >  1:917688/1‑100 (MQ=38)                                  gtgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                     <  1:2634264/100‑1 (MQ=38)                                  gtgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                     >  2:1528304/1‑100 (MQ=35)                                  gtgAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAg                     >  2:2127999/1‑100 (MQ=38)                                    gAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggg                   <  2:2422861/100‑1 (MQ=38)                                    gAAGGTGTACTGTGAGGTATGCTGAAGATATCAGAAGTGCGAATGCTGACATAAGTAAAGATAAAGCGGGTGAAAAGCACGCTAGCCGGAAGAACAAggg                   >  2:1285128/1‑100 (MQ=11)                                      aGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGATATAAGTAACGATAAAGCGGGTGAAAAGCCCGCGCGCCGGAAGACCAAGGGtt                 <  2:1844336/100‑1 (MQ=255)                                      aGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGtt                 <  2:1756486/100‑1 (MQ=38)                                        gtgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc               <  1:591171/100‑1 (MQ=38)                                        gtgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc               <  1:2096857/100‑1 (MQ=38)                                        gtgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc               <  1:296373/100‑1 (MQ=38)                                         tgtACTGTGAGGTATGCTGGAGTTATCAGAAGTGCGAATGCTTACATAAGTAACTATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc               <  1:217823/99‑1 (MQ=255)                                         tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt              >  2:1493187/1‑100 (MQ=38)                                         tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt              >  2:2540647/1‑100 (MQ=35)                                          gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTg             >  2:2341878/1‑100 (MQ=38)                                          gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTg             <  2:2561454/100‑1 (MQ=38)                                          gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTg             <  1:617476/100‑1 (MQ=38)                                            gcTGTGAGGTATGCTGGAGATATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAATGCCCGCTCGCCTGAAGACCAAGGGTTCCTGTc           <  2:1202118/99‑1 (MQ=255)                                            aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGCCATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCAGGAAGACCAAGGGTTcat              >  1:560041/1‑95 (MQ=255)                                            aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc           <  1:2445798/100‑1 (MQ=35)                                             cTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc          >  2:2479154/1‑100 (MQ=33)                                              tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCa         <  1:1957111/100‑1 (MQ=33)                                               gtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa        >  1:696667/1‑100 (MQ=33)                                                   ggTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt    <  2:15150/100‑1 (MQ=32)                                                     tATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt    <  1:2529446/98‑1 (MQ=11)                                                     tATGCTGGAGGTAACAGAAGTGCGAATGCTGACATAAGTCACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAAGGTTCGTGTCCAACGTTaa  >  2:1007285/1‑100 (MQ=11)                                                                                                    |                                                     GCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAA  >  NC_000913/226935‑227086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.