BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 689300	NA (NA)	6 (0.070)	6/164	NT	NA	intergenic (‑287/+43)	insH1/lnt	IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase
*	?	NC_000913	= 689331	NA (NA)	6 (0.070)	6/164	NT	NA	intergenic (‑318/+12)	insH1/lnt	IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase

Only 100 of 121 total aligned reads displayed.

TGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCG  >  NC_000913/689201‑689398

tGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAg                                                                                                    >  2:768927/1‑100 (MQ=255)

    tCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtg                                                                                                <  1:1251857‑M1/100‑5 (MQ=255)

     cAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgc                                                                                               <  2:2440227‑M1/100‑6 (MQ=255)

     cAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgc                                                                                               >  1:2344596‑M1/1‑95 (MQ=255)

     cAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgc                                                                                               >  2:1844368‑M1/1‑95 (MQ=255)

      aGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgcc                                                                                              >  1:822094‑M1/1‑94 (MQ=255)

       gggTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccg                                                                                             >  1:1906899‑M1/1‑93 (MQ=255)

       gggTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgcca                                                                                             <  2:1015369‑M1/100‑8 (MQ=255)

        ggTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGa                                                                                            <  1:1952147/100‑1 (MQ=255)

        ggTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGa                                                                                            >  2:2342663/1‑100 (MQ=255)

        ggTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGa                                                                                            >  1:1475769/1‑100 (MQ=255)

             gCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAatat                                                                                       >  2:115419/1‑100 (MQ=255)

              ccTTGTATAACAAAGCAATAGATGTGACAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATg                                                                                      >  2:1282908/1‑100 (MQ=255)

               cTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATgg                                                                                     >  1:1731377/1‑100 (MQ=255)

                ttttataATAAAGCAATAGATGTGCTAATGTTGTATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATgg                                                                                     <  1:2038903/96‑1 (MQ=255)

                ttGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATggg                                                                                    <  1:2016851/100‑1 (MQ=255)

                  gTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAGATATGGGAt                                                                                  <  2:1234353/100‑1 (MQ=255)

                  gTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGAt                                                                                  <  1:197771/100‑1 (MQ=255)

                   tataACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATg                                                                                 <  1:2054700/100‑1 (MQ=255)

                     taACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTa                                                                               >  2:2102810/1‑100 (MQ=255)

                      aaCAAATCAATAGATGTGCCAAAGTGGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTTAGCGTGCCGAAATATGGGATGTAt                                                                              <  2:2347858/100‑1 (MQ=255)

                       aCAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAANATTGTTATCCGGATAATGCANTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTAtt                                                                             <  1:662051/100‑1 (MQ=255)

                        cAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTc                                                                            >  1:1104831/1‑100 (MQ=255)

                        cAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTc                                                                            >  2:786554/1‑100 (MQ=255)

                        cAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCAACCGGTGAGCGTGCCGAAATATGGGATGTAtt                                                                             >  1:93432/1‑99 (MQ=255)

                         aaaGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCC                                                                           >  1:462186‑M2/1‑100 (MQ=255)

                          aaGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCG                                                                          >  1:358652‑M2/1‑100 (MQ=255)

                           aGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGG                                                                         >  2:881972‑M2/1‑100 (MQ=255)

                              aaTAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccggaatacatcccatatttcggcac                                                                      <  2:1458088‑M1/100‑31 (MQ=255)

                              aaTAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAC                                                                      <  2:1483238‑M2/100‑1 (MQ=255)

                              aaTAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAC                                                                      >  1:1086753‑M2/1‑100 (MQ=255)

                              aaTAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAC                                                                      <  2:1240099‑M2/100‑1 (MQ=255)

                               aTAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACG                                                                     >  2:1672128‑M2/1‑100 (MQ=255)

                                 aGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccggaatacatcccatatttcggcacgct                                                                   <  1:1916052‑M1/100‑34 (MQ=255)

                                  gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                                                  >  2:738100/1‑100 (MQ=255)

                                  gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                                                  >  1:1933253/1‑100 (MQ=255)

                                  gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                                                  >  1:1955061/1‑100 (MQ=255)

                                  gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                                                  >  1:1424500/1‑100 (MQ=255)

                                  gATGCGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCCCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                                                  <  2:1826751/100‑1 (MQ=255)

                                   cttccgatctgTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaa                                                                 <  1:267721/90‑1 (MQ=255)

                                   aTGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccggaatacatcccatatttcggcacgctca                                                                 <  1:811653‑M1/100‑36 (MQ=255)

                                    tgtgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGcgtgccggaatacatcccatatttcggcacgctcac                                                                <  1:320354‑M1/100‑37 (MQ=255)

                                     gtgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTTCGGAACGATaaga                                                               >  2:2205718/1‑100 (MQ=255)

                                     gtgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaaga                                                               <  1:1432012/100‑1 (MQ=255)

                                     gtgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaaga                                                               <  1:2101264/100‑1 (MQ=255)

                                     gtgCCAAAGTTGAATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaaga                                                               >  1:1739400/1‑100 (MQ=255)

                                         cAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAggg                                                           <  1:1866821/100‑1 (MQ=255)

                                          aaaGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAgg                                                            <  1:441648/98‑1 (MQ=255)

                                          aaaGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGa                                                          <  2:1352964/100‑1 (MQ=255)

                                          aaaGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGa                                                          <  1:1156454/100‑1 (MQ=255)

                                             gTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaaagatcggaag                                                       >  2:267719/1‑90 (MQ=255)

                                             gTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaaagatcggaag                                                       >  2:496479/1‑90 (MQ=255)

                                                ggATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTAttt                                                    <  2:1649266/100‑1 (MQ=255)

                                                ggATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTAttt                                                    <  2:585048/100‑1 (MQ=255)

                                                 gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                                                   >  2:2194501/1‑100 (MQ=255)

                                                 gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                                                   >  1:2283491/1‑100 (MQ=255)

                                                 gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                                                   <  2:1695784/100‑1 (MQ=255)

                                                 gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                                                   <  2:361735/100‑1 (MQ=255)

                                                 gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                                                   <  2:1573303/100‑1 (MQ=255)

                                                   tAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACg                                                 >  2:1770246/1‑100 (MQ=255)

                                                   tAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACg                                                 <  1:789422/100‑1 (MQ=255)

                                                   tAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACg                                                 >  1:1329283/1‑100 (MQ=255)

                                                     ggAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGt                                                >  1:2193640/1‑99 (MQ=255)

                                                     ggAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTc                                               >  1:649363/1‑100 (MQ=255)

                                                     ggAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTc                                               >  2:2284564/1‑100 (MQ=255)

                                                     ggAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTc                                               >  2:1365040/1‑100 (MQ=255)

                                                     ggAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTc                                               >  1:1473187/1‑100 (MQ=255)

                                                     ggAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATAGAATAAATACCGACACGATAAGAAGGGATTATTTACGTc                                               >  1:602603/1‑100 (MQ=255)

                                                       agaATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGc                                             <  2:1475755/100‑1 (MQ=255)

                                                       agaATATTGTTATCCGGATAACGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGc                                             <  2:1366730/100‑1 (MQ=255)

                                                        gaATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGc                                             <  2:2156846/99‑1 (MQ=255)

                                                          atatTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGa                                          >  1:369747/1‑100 (MQ=255)

                                                             ttGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGc                                       <  2:1810006/100‑1 (MQ=255)

                                                               gTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCa                                      >  1:2422547/1‑99 (MQ=255)

                                                               gTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAg                                     <  2:1906881/100‑1 (MQ=255)

                                                                  aTCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACt                                  >  1:583122/1‑100 (MQ=255)

                                                                      ggATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACtcatc                              <  2:583118/100‑1 (MQ=255)

                                                                       gATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACtcatca                             <  1:283598/100‑1 (MQ=255)

                                                                        aTAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCaa                            <  1:2556200/100‑1 (MQ=255)

                                                                         tAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAac                           <  2:1104821/100‑1 (MQ=255)

                                                                          aaTGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGTGATGTATTCCGGCACGATAAGAAAGGATTATTTACGTCGCTGACGCAGACTCATCAaca                          <  1:2213686/100‑1 (MQ=255)

                                                                          aaTGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAaca                          <  1:718749/100‑1 (MQ=255)

                                                                          aaTGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAaca                          >  2:2119687/1‑100 (MQ=255)

                                                                            tGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAAcaca                        >  2:36638/1‑100 (MQ=255)

                                                                               aCTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACAcagca                     <  2:2629795/100‑1 (MQ=255)

                                                                               aCTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACAcagca                     >  2:1680292/1‑100 (MQ=255)

                                                                                cTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACAcagcag                    <  2:1769929/100‑1 (MQ=255)

                                                                                  gATGCCGCTTTTGTTGAGCGTGCTGTAATATGGGATGTATTGCGGCAAGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAgcagca                  <  1:1046721/100‑1 (MQ=255)

                                                                                  gATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAgcagca                  <  2:1704018/100‑1 (MQ=255)

                                                                                  gATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAgcagca                  <  1:1240111/100‑1 (MQ=255)

                                                                                    tGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCaaa                >  2:144103/1‑100 (MQ=255)

                                                                                       cGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCTGGTACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAAc              <  1:2342693/99‑1 (MQ=255)

                                                                                        ggaTCCGGTGAGCGTGCCGAAATATGGGATTTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAAcc             <  1:2396829/97‑1 (MQ=255)

                                                                                        gCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGTCTCATCAACACAGCAGCAAAACCa            <  2:2630367/100‑1 (MQ=255)

                                                                                         cATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCaa           >  2:291327/1‑100 (MQ=255)

                                                                                              ggTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGCATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACaa       >  1:1533721/1‑99 (MQ=255)

                                                                                               gTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGctcaccggatgcggcatcagtgcattatccggataacaatattctcctatccaactttggcaca     <  1:320354‑M2/100‑65 (MQ=255)

                                                                                                tGAGCGTGCCGAAATATGGGATGTATTCCGGCACGctcaccggatgcggcatcagtgcattatccggataacaatattctcctatccaactttggcacat    <  1:811653‑M2/100‑66 (MQ=255)

                                                                                                  aGCGTGCCGAAATATGGGATGTATTCCGGCACGctcaccggatgcggcatcagtgcattatccggataacaatattctcctatccaactttggcacatct  <  1:1916052‑M2/100‑68 (MQ=255)

                                                                                                  aGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCg  <  1:1007498/100‑1 (MQ=255)

TGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCG  >  NC_000913/689201‑689398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.