New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3470738 =NA (NA)5 (0.050) 4/168 NT NA coding (592/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 3470767 = NA (NA)coding (563/1185 nt) tufA translation elongation factor EF‑Tu 1

ATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGT  >  NC_000913/3470668‑3470845
                                                                                                   |                                                                              
aTGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGAttt                                                                                <  1:1284831/100‑1 (MQ=33)
aTGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGAttt                                                                                <  1:2627008/100‑1 (MQ=33)
 tGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGAtttt                                                                               >  1:1589381/1‑100 (MQ=33)
  ggAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGAtttt                                                                               >  2:1341465/1‑99 (MQ=33)
  ggAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTc                                                                              <  2:1549245/100‑1 (MQ=32)
   gagaATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCg                                                                             <  2:2485114/100‑1 (MQ=33)
   gagaATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCg                                                                             <  1:1567665/100‑1 (MQ=33)
    agaATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGc                                                                            <  1:2188578/100‑1 (MQ=32)
     gaATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCt                                                                           >  1:2636622/1‑100 (MQ=33)
        tACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTcc                                                                        <  1:1450535/100‑1 (MQ=33)
        tACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTcc                                                                        >  1:796395/1‑100 (MQ=33)
         aCGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTccc                                                                       <  2:59492/100‑1 (MQ=33)
         aCGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTccc                                                                       <  2:179857/100‑1 (MQ=32)
         aCGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTccc                                                                       <  1:830943/100‑1 (MQ=33)
          cGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCa                                                                      >  2:981023/1‑100 (MQ=33)
          cGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCa                                                                      >  1:2360662/1‑100 (MQ=33)
           gTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCAc                                                                     <  1:66512/100‑1 (MQ=33)
             cTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCActc                                                                   >  2:2286509/1‑100 (MQ=32)
              ttCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCActct                                                                  >  2:170573/1‑100 (MQ=33)
               tCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTg                                                                 >  2:129501/1‑100 (MQ=33)
                 gATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCg                                                               >  1:21874/1‑100 (MQ=33)
                 gATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCg                                                               <  2:141806/100‑1 (MQ=33)
                  aTCGGCAGCAGGAACGGCTTGTCAATAGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGt                                                              >  2:456311/1‑100 (MQ=18)
                     ggCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGc                                                           <  2:2187915/100‑1 (MQ=33)
                      gcagcaGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGcc                                                          <  2:120836/100‑1 (MQ=33)
                       ctgcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCt                                                         <  1:2458527/98‑1 (MQ=18)
                       cagcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCt                                                         >  2:845783/1‑100 (MQ=32)
                        agcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCtt                                                        <  1:1395585/100‑1 (MQ=33)
                         gcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCtag                                                       >  2:2458497/1‑98 (MQ=18)
                         gcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTc                                                       >  1:1068243/1‑100 (MQ=33)
                         gcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTc                                                       >  1:1069363/1‑100 (MQ=33)
                         gcagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTc                                                       <  2:2281007/100‑1 (MQ=33)
                          cagGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTcc                                                      <  2:2166808/100‑1 (MQ=32)
                           agGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCa                                                     >  1:502898/1‑100 (MQ=33)
                           agGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCa                                                     <  1:981033/100‑1 (MQ=33)
                            ggAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAg                                                    <  1:196452/100‑1 (MQ=32)
                             gAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAgc                                                   >  1:1336110/1‑100 (MQ=32)
                              aaCGGCTTGTCAATCGCACGCGCTGGTTCCGGAATATATGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAgcg                                                  <  2:770895/100‑1 (MQ=12)
                               aCGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAgcgc                                                 <  1:2342639/100‑1 (MQ=32)
                               aCGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCAAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAgcgc                                                 >  2:16941/1‑100 (MQ=17)
                                cGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTc                                                       <  1:1815863/93‑1 (MQ=32)
                                  gCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCttt                                              >  2:1843021/1‑100 (MQ=33)
                                   cTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTc                                             <  2:1639023/100‑1 (MQ=33)
                                    ttGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCa                                            >  2:2405966/1‑100 (MQ=33)
                                      gTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCaga                                          >  2:330284/1‑100 (MQ=33)
                                       tCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCagag                                         <  1:1424083/100‑1 (MQ=33)
                                       tCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCagag                                         <  1:2157893/100‑1 (MQ=33)
                                        cAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGc                                        <  2:1667587/100‑1 (MQ=33)
                                         aaTCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGc                                        <  1:2361194/99‑1 (MQ=32)
                                          aTCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAg                                      >  1:2080583/1‑100 (MQ=32)
                                           tCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGa                                     <  1:2432075/100‑1 (MQ=32)
                                            cgcacgcaCTGATTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGaa                                    >  2:1393090/1‑100 (MQ=16)
                                             gCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAAc                                   <  1:1843038/100‑1 (MQ=33)
                                             gCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAAc                                   >  1:575293/1‑100 (MQ=33)
                                             gCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAAc                                   >  2:1049425/1‑100 (MQ=33)
                                                     tGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCacgaacg                           >  1:1991896/1‑100 (MQ=33)
                                                       gTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGAt                         >  2:2033858/1‑100 (MQ=33)
                                                         tCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCg                       <  1:2246582/100‑1 (MQ=33)
                                                         tCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCg                       <  2:557651/100‑1 (MQ=32)
                                                          ccGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCgg                      <  1:170575/100‑1 (MQ=32)
                                                           cGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGa                     >  2:2528811/1‑100 (MQ=33)
                                                            ggAATATAAGAATCCAGGAAGCCAGCCAGTTCTAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAg                    <  1:481162/100‑1 (MQ=17)
                                                            ggAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAg                    <  1:330286/100‑1 (MQ=33)
                                                            ggAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCATCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAg                    >  2:1695873/1‑100 (MQ=18)
                                                            ggAATATAAGAATCCAGGAAGCCAGCCAGAACCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAg                    >  2:2492412/1‑100 (MQ=16)
                                                             gAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAgt                   <  1:932723/100‑1 (MQ=32)
                                                               atatAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAgtgt                 >  1:1456848/1‑100 (MQ=32)
                                                                tataAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAGTgtc                <  1:1190260/100‑1 (MQ=31)
                                                                               agacagccagTTCCAGGATTTTCGCTTCCCGCTCTGCGTCGCCTTCCTGTGCTTTCAGAGCAGAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGt  <  2:2138667/96‑1 (MQ=1)
                                                                                                   |                                                                              
ATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCCGGAATATAAGAATCCAGGAAGCCAGCCAGTTCCAGGATTTTCGCTTCCCACTCTGCGTCGCCTTCCAGCGCTTTCAGAGCAGAACCACGAACGATCGGAGTGTCGTCGCCCGGGAAGT  >  NC_000913/3470668‑3470845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.