| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3943467 = | NA (NA) | 16 (0.180) | 9/166 | NT | 43.8% | noncoding (33/76 nt) | gltU | tRNA‑Glu |
| ? | NC_000913 | 3943474 = | 22 (0.230) | noncoding (40/76 nt) | gltU | tRNA‑Glu | |||||
TCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGG > NC_000913/3943376‑3943567 | gaagatgagttttgagatattaaggcaggtgactttcacttacaaaccagcaagtggcgtaccctaggggattcgaacccctgttaccgccgtgaaaggg < 1:2125497‑M2/2‑1 (MQ=255) cacacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggc < 2:1430023/100‑1 (MQ=33) aagatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggagtcgaacccctgttaccgccgtgaaagGGc < 1:2285761‑M2/3‑1 (MQ=255) agatgagttttgagatattaaggcaggttactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGc < 1:1376421‑M2/3‑1 (MQ=255) agatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCg > 2:74508‑M2/97‑100 (MQ=255) gatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCgg < 1:1026633‑M2/5‑1 (MQ=255) gatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCgg < 2:779141‑M2/5‑1 (MQ=255) gatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCgg < 2:667457‑M2/5‑1 (MQ=255) gatgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCgg < 2:1292097‑M2/5‑1 (MQ=255) cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg > 2:1959722/1‑100 (MQ=33) cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg > 2:2230234/1‑100 (MQ=33) cacaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAcggcgg > 1:419902/1‑100 (MQ=33) atgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCGGt < 1:2221248‑M2/6‑1 (MQ=255) atgagttttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagGGCGGt > 2:2410035‑M2/95‑100 (MQ=255) acaGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGt > 1:834966/1‑100 (MQ=33) tGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAgg < 1:1138253/100‑1 (MQ=32) tGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAgg < 1:689786/100‑1 (MQ=32) ttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccctttcacGGCGGTAACAggg < 2:1642183‑M2/13‑1 (MQ=255) ttgagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccctttcacGGCGGTAACAggg < 2:646186‑M2/13‑1 (MQ=255) gTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAggg < 1:371765/100‑1 (MQ=33) tCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAgggg < 2:1123722/100‑1 (MQ=33) tCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAgggg > 1:2071960/1‑100 (MQ=33) cTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGt > 2:374806/1‑100 (MQ=33) cTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGAGGt > 2:1298553/1‑100 (MQ=18) cTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAAGACACCGCCCTTTCACGTCGGTAACAgggg > 1:1151052/1‑99 (MQ=16) cTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGACCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGt > 1:2374370/1‑100 (MQ=18) gATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTTATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc < 2:1105671/100‑1 (MQ=17) gATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc > 2:1751610/1‑100 (MQ=33) gATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGACCTTTCACGGCGGTAACAgg > 2:1998981/1‑95 (MQ=17) atatGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg < 1:588801/100‑1 (MQ=14) aTAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCg < 1:2292340/100‑1 (MQ=33) tAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCgn < 2:1315476/100‑2 (MQ=17) attaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccctttcacGGCGGTAACAGGGGTTCGaa < 1:47977‑M2/20‑1 (MQ=255) ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAt > 1:1016415/1‑100 (MQ=31) ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAt > 1:2027619/1‑100 (MQ=31) ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAt < 1:1815990/100‑1 (MQ=31) ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAAt < 1:1815933/100‑1 (MQ=31) ggAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAAGACACCGCCCTTTAACGACGGTAACAGAGATACGaa > 1:1138436/1‑99 (MQ=11) gAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTTGAGGCCCAGGACACCGCCCTTTCAAGGCGGTAACAGGGGTTCGAATc > 2:1788529/1‑100 (MQ=2) actcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccctttcacGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACt < 2:1755862‑M2/39‑1 (MQ=255) cccctgttaccgccgtgaaagGGCGGTGACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCa > 2:1093749‑M2/22‑100 (MQ=255) cccctgttaccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCAACCTTAATATCTCa > 1:555517‑M2/22‑100 (MQ=255) ccctgttgccgacgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaa > 2:1386251‑M2/21‑100 (MQ=255) tgttaccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAAc > 1:595386‑M2/18‑100 (MQ=255) gttaccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACt > 1:1934531‑M2/17‑100 (MQ=255) ttaccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTc > 1:59310‑M2/16‑100 (MQ=255) ttaccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTc > 1:59813‑M2/16‑100 (MQ=255) taccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCa > 1:565913‑M2/15‑100 (MQ=255) accgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCAt > 2:2613278‑M2/14‑100 (MQ=255) accgccgtgaaagGGCGGTAACAGGGGTACGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTCAATATCTCaaaacagac > 2:1556930‑M2/14‑96 (MQ=255) ccgccgtgaaagGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATc > 1:850604‑M2/13‑100 (MQ=255) tgaaagGGCGGTGACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCggg < 1:1093759‑M2/94‑1 (MQ=255) | TCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGG > NC_000913/3943376‑3943567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |