| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943635 | NA (NA) | 19 (0.210) | 13/164 | NT | 56.3% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037446 | 16 (0.160) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
ATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGG > NC_000913/4037347‑4037545 | aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC < 2:2002522‑M2/100‑1 (MQ=255)aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC < 2:2353730‑M2/100‑1 (MQ=255)aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC < 1:1344245‑M2/100‑1 (MQ=255)aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC > 2:2376835‑M2/1‑100 (MQ=255) taaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcat > 2:1141210‑M2/1‑94 (MQ=255) aaaaaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttg > 2:2365036‑M2/1‑92 (MQ=255) tACTTCAGAGTGTACCTGCAAAGGTTCACTTCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag > 2:730946‑M2/1‑87 (MQ=255) tACTTCAGAGTGTACCTGCAAAGGTTCACTGCTAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag > 1:2392906‑M2/1‑87 (MQ=255) aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATGAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt > 2:1447350‑M2/1‑86 (MQ=255) cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtg > 1:878835‑M2/1‑85 (MQ=255) cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtg > 1:687617‑M2/1‑85 (MQ=255) cAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcattgttcagtgttt > 2:2582345‑M2/1‑82 (MQ=255) gagTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttca > 1:206774‑M2/1‑80 (MQ=255) gtttACCTGCAAAGGTTCATTGCGAAGTTTTGTTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGtctctc < 1:2072179/97‑1 (MQ=0) tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaatt > 1:936092‑M2/1‑77 (MQ=255) aCCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaattttc > 2:1044195‑M2/1‑74 (MQ=255) ccTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTACAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaattttca > 2:530448‑M2/1‑73 (MQ=255) ccTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgaaagttgttcagtgtttcaattttca > 1:1961791‑M2/1‑73 (MQ=255) cTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATTTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaattttcag > 1:2280118‑M2/1‑72 (MQ=255) gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca < 1:1987201/100‑1 (MQ=11) ttCACTGCGAAGTTTTGCTCTTTAAAAATCTTGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac < 2:1796364/100‑1 (MQ=14) tCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACg < 2:496932/100‑1 (MQ=32) cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga > 2:1529781/1‑100 (MQ=33) aCTGCTAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 1:1617139/100‑1 (MQ=17) aCTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat < 2:179173/100‑1 (MQ=33) cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCACAAATTTTCGCAACACgatg > 2:1456946/1‑100 (MQ=17) gCGTAGTTTTGCTCTATAAAAATCTGGATCAAGCTGAGAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCGCAAATTTTGGACACACgatg > 2:1806937/1‑98 (MQ=11) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat < 2:2449789/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg > 2:120461/1‑100 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 2:23567/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg > 2:413055/1‑100 (MQ=33) gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga > 2:239642/1‑100 (MQ=35) aGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCCTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt > 2:1503200/1‑100 (MQ=17) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:2275285/100‑1 (MQ=31) naatCTGGATCAAGCTGAAAATTGAAACACTGAACAACgagagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaa < 1:1370793‑M2/99‑63 (MQ=255) cTGGATCAAGCTGAAAATTGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaaaat < 1:631711‑M2/100‑67 (MQ=255) ttGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 2:2405149‑M2/100‑84 (MQ=255) ttGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 1:1442131‑M2/100‑84 (MQ=255) aaaCACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttga < 2:1129032‑M2/100‑87 (MQ=255) aaCACTGAACAACgagagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaggatgagttttgag < 1:1542407‑M2/100‑88 (MQ=255) acacTGAACAACgagagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgaga < 2:98257‑M2/100‑89 (MQ=255) cacTGAACAACgagagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat < 2:1083271‑M2/100‑90 (MQ=255) cacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat < 2:816372‑M2/100‑90 (MQ=255) cacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatatcaaaaatcacccgaagatgagttttgagat < 1:771790‑M2/100‑90 (MQ=255) gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatta < 2:1987538‑M2/100‑94 (MQ=255) acaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaag > 2:2018056‑M2/1‑5 (MQ=255) acaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaag > 1:2094673‑M2/1‑5 (MQ=255) caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg < 1:1690959‑M2/100‑97 (MQ=255) caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg > 2:319125‑M2/1‑4 (MQ=255) caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg < 1:30921‑M2/100‑97 (MQ=255) caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg < 2:1754627‑M2/100‑97 (MQ=255) aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacctcacccgaagatgagttttgagatattaaggc > 2:1347310‑M2/1‑3 (MQ=255) actttcgttgttcagtgtttcaattttcagcttgatccagatttttaaatagcaaatatctcaaacatcacccgaagatgagttttgagatattaagaca < 1:1775170‑M2/100‑99 (MQ=255) ctttcgttgtttagtgtttctattttcagcttgttcctgatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag > 1:193498‑M2/1‑1 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 2:1138426‑M2/100‑100 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 2:1299173‑M2/100‑100 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag > 2:369677‑M2/1‑1 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 2:2027598‑M2/100‑100 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggc > 1:2095862‑M2/1‑1 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatacagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 2:1427523‑M2/100‑100 (MQ=255) | ATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGG > NC_000913/4037347‑4037545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |