New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4008401 =NA (NA)5 (0.060) 5/164 NT NA noncoding (5/34 nt) REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4008431 = NA (NA)intergenic (+54/+8) rhtC/rhtB threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump

Only 100 of 139 total aligned reads displayed.

GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCTT  >  NC_000913/4008332‑4008530
                                                                                                   |                                                                                                   
gattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACa                                                                                                     >  1:1528445‑M1/70‑100 (MQ=255)
 attttcggctcgttgtttatgcttgtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACat                                                                                                    >  1:901916‑M1/69‑100 (MQ=255)
   gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                                                  >  1:1037183/1‑100 (MQ=255)
      aTTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttt                                                                                               <  2:2572931/100‑1 (MQ=255)
        ttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttttt                                                                                             >  1:2011125/1‑100 (MQ=255)
         tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                                                            >  1:1272279/1‑100 (MQ=255)
         tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                                                            >  2:2425607/1‑100 (MQ=255)
          gcgggATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  2:2403746/4‑100 (MQ=255)
          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           <  2:286875/100‑1 (MQ=255)
          gCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCa                                                                                           >  1:350487/1‑100 (MQ=255)
            cGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACg                                                                                         >  2:2634846/1‑100 (MQ=255)
            cGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACg                                                                                         >  2:2527396/1‑100 (MQ=255)
            cGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATACGACATTATTTTTCACg                                                                                         >  1:942485/1‑100 (MQ=255)
             ggATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGc                                                                                        >  2:511332/1‑100 (MQ=255)
               aTTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCAt                                                                                      <  1:1981131/100‑1 (MQ=255)
                tttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGATTACGCCGCATCCGACATTATTTTTCACGCAt                                                                                      <  1:2518795/99‑1 (MQ=255)
                  tGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGcc                                                                                   <  1:1014138/100‑1 (MQ=255)
                   ggCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCt                                                                                  >  1:1688419/1‑100 (MQ=255)
                   ggCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCt                                                                                  >  2:1088406/1‑100 (MQ=255)
                    gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCt                                                                                  >  1:1774855/1‑99 (MQ=255)
                     cattcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCt                                                                                  >  1:635460/1‑98 (MQ=255)
                       ttcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                                              <  2:873766/100‑1 (MQ=255)
                       ttcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                                              <  1:2353993/100‑1 (MQ=255)
                       ttcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                                              <  2:2186399/100‑1 (MQ=255)
                       ctcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGcc                                                                              <  1:446883/99‑1 (MQ=255)
                        tcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCg                                                                             >  2:1684223/1‑100 (MQ=255)
                        tcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCg                                                                             <  1:2496192/100‑1 (MQ=255)
                        tcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCg                                                                             <  1:2495118/100‑1 (MQ=255)
                         cattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGa                                                                            >  1:1727064/1‑100 (MQ=255)
                          attTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGAt                                                                           <  1:2635022/100‑1 (MQ=255)
                           tttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATg                                                                          <  1:2171429/100‑1 (MQ=255)
                           gggagcgctgttagcatcggcgaggcatgcgtgaaaaataatgtcggatgcggcgtaaacgccttataagacATTATTTTTCACGCATGCCTCGCCGAt                                                                           >  1:2056643‑M2/73‑99 (MQ=255)
                            ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                                                         <  1:1359874/100‑1 (MQ=255)
                              gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGCCATTATTTTTCACGCATGCCTAGCCGATgtt                                                                        >  2:547656/1‑97 (MQ=255)
                              gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                                                       >  2:547589/1‑100 (MQ=255)
                               attattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTaa                                                                      >  2:2657244/1‑100 (MQ=255)
                                 tattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACa                                                                    >  1:995680/1‑100 (MQ=255)
                                  attTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAg                                                                   <  1:1960696/100‑1 (MQ=255)
                                  attTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAg                                                                   <  1:157825/100‑1 (MQ=255)
                                  attTCGCGGGGATGCCAGACTCGTCTTCAGAGTAAGTCGGATAATGCGTTTACGCCGCATCCGACATTATTTTTCACTCATGCCTCGCCGATGCTAACAg                                                                   >  2:2385873/1‑100 (MQ=38)
                                   tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                                                  <  1:339093/100‑1 (MQ=255)
                                   tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                                                  >  1:1919261/1‑100 (MQ=255)
                                   tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                                                  >  1:2414039/1‑100 (MQ=255)
                                    ttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcg                                                                 >  1:262490/1‑100 (MQ=255)
                                      cgcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCt                                                               >  2:1252491/1‑100 (MQ=255)
                                      cgcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCt                                                               <  2:350485/100‑1 (MQ=255)
                                        cgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTcc                                                             >  1:852472/1‑100 (MQ=255)
                                         ggTGATGCCAGACGCGTCTTCAGAGTAAGACGGAAAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTccc                                                            >  2:1525542/1‑100 (MQ=255)
                                          gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                                                           <  2:952158/100‑1 (MQ=255)
                                          atcggcgaggcatgcgtgaaaaataatGTCTTATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTccc                                                            >  1:2056643‑M1/28‑99 (MQ=255)
                                           tGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccac                                                          <  2:104619/100‑1 (MQ=255)
                                            gATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacn                                                         <  2:460417/100‑2 (MQ=255)
                                              tGCCAGCCGCGTCTTCAGAGTAAAACGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                                                       >  2:1286867/1‑100 (MQ=255)
                                              tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                                                       <  1:2192324/100‑1 (MQ=255)
                                              tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                                                       >  1:2473473/1‑100 (MQ=255)
                                               gCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGc                                                      <  1:2634877/100‑1 (MQ=255)
                                                ccAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAAGAGCGCTCCCACCAGCa                                                     >  2:1548014/1‑100 (MQ=255)
                                                 cAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCAt                                                    <  2:70964/100‑1 (MQ=255)
                                                 cAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCAt                                                    >  1:478618/1‑100 (MQ=255)
                                                 cAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCAt                                                    >  1:942541/1‑100 (MQ=255)
                                                 cAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCAt                                                    >  1:92544/1‑100 (MQ=255)
                                                   gACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATaa                                                  >  1:1894220/1‑100 (MQ=255)
                                                           ttCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAg                                          <  2:1686060/100‑1 (MQ=255)
                                                           ttCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCACTCCCACCAGCATAAACAACGa                                           >  1:475082/1‑99 (MQ=255)
                                                            tCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGc                                         >  2:932935/1‑100 (MQ=255)
                                                             cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc                                        >  2:1409351/1‑100 (MQ=255)
                                                             cAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGcc                                        >  2:1409440/1‑100 (MQ=255)
                                                               gagTAAGTCGGATAAGGCGTTTCCGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa                                      <  2:1037173/100‑1 (MQ=255)
                                                               gagTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGa                                      >  1:2345368/1‑100 (MQ=255)
                                                                   atgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACAAGCATAAACAACGAGCCGAAAAt                                  >  1:901916‑M2/33‑100 (MQ=255)
                                                                    tgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATc                                 >  1:1528445‑M2/32‑100 (MQ=255)
                                                                    aGTCGGATAAGGCTTTAACGCAGAATCCGAAATAATTTTAAAGATGTGACTTGCGGATCCTAACAGCGCTCCCACCAGCATAAACAAAGAGTCGaaaaac                                 >  2:1231623/1‑98 (MQ=255)
                                                                     gtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt                                >  1:1271531‑M2/31‑100 (MQ=255)
                                                                     GTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACATCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt                                >  2:466621‑M1/1‑100 (MQ=255)
                                                                       CGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTa                              <  1:2609384‑M1/100‑1 (MQ=255)
                                                                       CGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTa                              >  2:2473443‑M1/1‑100 (MQ=255)
                                                                        GGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAt                             <  1:1239224‑M1/100‑1 (MQ=255)
                                                                        GGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAt                             <  1:1538445‑M1/100‑1 (MQ=255)
                                                                         GATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAtt                            >  1:511336‑M1/1‑100 (MQ=255)
                                                                             atgCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTc                           <  2:2280541/95‑1 (MQ=255)
                                                                              ggCGTTTACGCCGCATCCGACATTATTTTTCACTCTTTCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAgcg                       >  2:193787/1‑100 (MQ=255)
                                                                              ggCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAgcg                       >  1:1889987/1‑100 (MQ=255)
                                                                                cGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAACTTATTCAGCGcc                     >  1:834968/1‑100 (MQ=255)
                                                                                 gTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCt                    <  1:2403776/100‑1 (MQ=255)
                                                                                   ttACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTc                  <  1:2304142/100‑1 (MQ=255)
                                                                                     acgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCAt                <  2:1271519‑M2/86‑1 (MQ=255)
                                                                                     aCGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCAt                <  2:1816138/100‑1 (MQ=255)
                                                                                      cgccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATc               >  2:1040414/1‑100 (MQ=255)
                                                                                       gccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCt              <  2:1773727/100‑1 (MQ=255)
                                                                                        ccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTg             <  1:1124829/100‑1 (MQ=255)
                                                                                        ccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTg             >  2:2107667/1‑100 (MQ=255)
                                                                                         cgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGc            <  1:524397/100‑1 (MQ=255)
                                                                                          gcATCCGACATTATTTTTCACGCATGCCTCGTCGATGTTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCt           <  2:1786537/100‑1 (MQ=255)
                                                                                          gcATCCGACATTATTTTTCACGCATGCCTCGTCGATGTTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCt           <  2:1786109/100‑1 (MQ=255)
                                                                                             tccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTg        <  1:1328000‑M2/94‑1 (MQ=255)
                                                                                               cgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGt      >  2:1442731‑M2/5‑100 (MQ=255)
                                                                                               cgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGt      >  2:1334940‑M2/5‑100 (MQ=255)
                                                                                                  cATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCt   >  2:1566932‑M2/2‑100 (MQ=255)
                                                                                                  cATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATATTATTCAGCGCCTTCATCTGCTTTGGTCCt   >  1:152729‑M2/2‑100 (MQ=255)
                                                                                                   attattTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCtt  <  2:852463/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCTT  >  NC_000913/4008332‑4008530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.