BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	39151 =	NA (NA)	8 (0.090)	5/164	NT	NA	noncoding (1/82 nt)	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	39181 =	NA (NA)	8 (0.090)	5/164	NT	NA	noncoding (31/82 nt)	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 133 total aligned reads displayed.

ACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  >  NC_000913/39082‑39278

cgctaagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgggagcacgaatgtagGCCGGATGCGGCGTAAACGCTTTATCCGGcc                                                                                                   >  2:746420‑M1/70‑100 (MQ=255)

   taagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgggagcacgaatgtagGCCGGATGCGGCGTAAACGCTTTATCCGGCCTa                                                                                                 >  2:2468764‑M1/67‑99 (MQ=255)

   gCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTAc                                                                                                >  2:1203410/1‑100 (MQ=255)

     tcGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACAt                                                                                              <  2:256918/99‑1 (MQ=255)

     ccGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACAt                                                                                              >  2:2633441/1‑100 (MQ=255)

      cGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACAtt                                                                                             >  1:2106853/1‑100 (MQ=255)

      cGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACAta                                                                                             >  1:256920/1‑99 (MQ=255)

        aaTTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCg                                                                                           <  2:2039695/100‑1 (MQ=255)

           ttCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGc                                                                                        <  1:1484767/100‑1 (MQ=255)

           ttCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGc                                                                                        <  2:2292836/100‑1 (MQ=255)

              ggCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTcc                                                                                     >  2:949355/1‑100 (MQ=255)

              ggCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTcc                                                                                     <  1:2218751/100‑1 (MQ=255)

                 aTGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGt                                                                                  >  2:2382489/1‑100 (MQ=255)

                   gggTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAg                                                                                >  1:1327760/1‑100 (MQ=255)

                    ggTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAgg                                                                               >  2:2169489/1‑100 (MQ=255)

                    ggTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAgg                                                                               <  1:184387/100‑1 (MQ=255)

                      tAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGcc                                                                             >  1:2225754/1‑100 (MQ=255)

                        gatgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTg                                                                           <  1:40614/100‑1 (MQ=255)

                        gatgatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTg                                                                           <  1:2127626/100‑1 (MQ=255)

                           gatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATa                                                                        <  2:2376989/100‑1 (MQ=255)

                           gatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATa                                                                        >  2:1844131/1‑100 (MQ=255)

                           gatCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATa                                                                        <  1:1955673/100‑1 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       >  2:1424678/1‑100 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       <  2:221453/100‑1 (MQ=255)

                            atCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATaa                                                                       <  2:1493654/100‑1 (MQ=255)

                             tCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAg                                                                      >  2:2086648/1‑100 (MQ=255)

                             tCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAg                                                                      <  2:326804/100‑1 (MQ=255)

                             tCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAg                                                                      <  1:408680/100‑1 (MQ=255)

                              ccATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGa                                                                     >  1:415782/1‑100 (MQ=255)

                              ccATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGa                                                                     >  2:1811687/1‑100 (MQ=255)

                               cATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGAc                                                                    >  2:1664166/1‑100 (MQ=255)

                               cATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGAc                                                                    >  1:472699/1‑100 (MQ=255)

                               cATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGAc                                                                    >  2:2138570/1‑100 (MQ=255)

                                attattTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGa                                                                     <  1:1086743/98‑1 (MQ=255)

                                  tattTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCa                                                                 >  2:400696/1‑100 (MQ=255)

                                      tGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAg                                                             <  2:874124/100‑1 (MQ=255)

                                       gCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGc                                                            >  2:688945/1‑100 (MQ=255)

                                          ccTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTc                                                         >  1:2388133/1‑100 (MQ=255)

                                          ccTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTc                                                         >  1:2387840/1‑100 (MQ=255)

                                          ccTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTc                                                         <  1:1635242/100‑1 (MQ=255)

                                           cTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCg                                                        >  1:1036103/1‑100 (MQ=255)

                                            tGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGc                                                       >  2:617060/1‑100 (MQ=255)

                                             gAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCa                                                      >  1:1954139/1‑100 (MQ=255)

                                             gAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCa                                                      <  1:2382519/100‑1 (MQ=255)

                                             gAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCa                                                      >  1:2604789/1‑100 (MQ=255)

                                              aaaaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCAt                                                     >  2:961534/1‑100 (MQ=255)

                                              aaaaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCAt                                                     >  1:1898336/1‑100 (MQ=255)

                                              aaaaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCAt                                                     >  2:540126/1‑100 (MQ=255)

                                                aaaTTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCa                                                   <  2:412387/100‑1 (MQ=255)

                                                     tATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAg                                              >  1:276984/1‑100 (MQ=255)

                                                      aTGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAgc                                             >  2:472742/1‑100 (MQ=255)

                                                        gTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAgcgc                                           <  1:2038532/100‑1 (MQ=255)

                                                         tAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCa                                          >  1:82422/1‑100 (MQ=255)

                                                          aGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCAc                                         >  1:2177985/1‑100 (MQ=255)

                                                           gcgcATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCCCg                                        >  2:561076/1‑100 (MQ=255)

                                                            cgcATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACgg                                       >  2:1959790/1‑100 (MQ=255)

                                                             gcATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACgg                                       >  2:1600374/1‑99 (MQ=255)

                                                              cATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGAc                                     <  2:793922/100‑1 (MQ=255)

                                                               aTGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACt                                    <  2:2627991/100‑1 (MQ=255)

                                                                  taggccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTa                                  >  2:2468764‑M2/34‑99 (MQ=255)

                                                                   cTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGc                                >  1:2478739/1‑100 (MQ=255)

                                                                   cTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGc                                >  2:1500579/1‑100 (MQ=255)

                                                                     gccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              >  2:2328259‑M2/31‑100 (MQ=255)

                                                                     gccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              >  1:1252580‑M2/31‑100 (MQ=255)

                                                                     gccggataaagcgtttacgcagcatccagcCTCCATTCGTGCTCCCGTAGGCCTGATAAGACGCATCACCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              >  2:372931‑M2/31‑100 (MQ=255)

                                                                     GCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              <  2:1761676‑M1/100‑1 (MQ=255)

                                                                     GCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCgg                              <  1:953265‑M1/100‑1 (MQ=255)

                                                                      ccggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGt                             >  1:1780768‑M2/30‑100 (MQ=255)

                                                                      CCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATAAGGCAGCGCACGGACTTAGCGGt                             <  1:2038263‑M1/100‑1 (MQ=255)

                                                                       CGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTa                            >  1:688949‑M1/1‑100 (MQ=255)

                                                                        ggataaagcgtttacgccgcatccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTAt                           >  2:531816‑M2/28‑100 (MQ=255)

                                                                        GGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTAt                           >  2:414349‑M1/1‑100 (MQ=255)

                                                                         GATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTAtt                          >  1:1116314‑M1/1‑100 (MQ=255)

                                                                             cggcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCtt                      >  2:1966269/1‑100 (MQ=255)

                                                                              ggcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTc                     <  1:2018461/100‑1 (MQ=255)

                                                                              ggcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTc                     <  2:820550/100‑1 (MQ=255)

                                                                               gcgTAAACGCTTTATTCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCa                    <  1:2612377/100‑1 (MQ=255)

                                                                               gcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCa                    <  1:808349/100‑1 (MQ=255)

                                                                               gcgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCa                    <  1:2563351/100‑1 (MQ=255)

                                                                                cgTAAACGCTTTATCTTGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAg                   <  1:359821/100‑1 (MQ=255)

                                                                                cgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAg                   <  2:2388103/100‑1 (MQ=255)

                                                                                cgTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAg                   <  1:761067/100‑1 (MQ=255)

                                                                                   aaaCGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCAc                <  2:2291806/100‑1 (MQ=255)

                                                                                   aaaCGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCAc                >  1:1323218/1‑100 (MQ=255)

                                                                                     aCGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCg              <  1:42306/100‑1 (MQ=255)

                                                                                      cGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCg              >  1:1984820/1‑99 (MQ=255)

                                                                                        cTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCAc           >  1:1450272/1‑100 (MQ=255)

                                                                                        cTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCAc           >  2:2075077/1‑100 (MQ=255)

                                                                                         tttATCCGGCCTACATTCGTGTTCCCTTAGGTCTGATAAGTCGCATTAGAGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACg          <  1:727356/100‑1 (MQ=255)

                                                                                          ttATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGa         >  2:1289873/1‑100 (MQ=255)

                                                                                           tATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGa         >  2:1150093/1‑99 (MQ=255)

                                                                                           tATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGAc        >  1:1818912/1‑100 (MQ=255)

                                                                                            atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGAcc       >  2:1907328‑M2/8‑100 (MQ=255)

                                                                                            atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGAcc       >  2:958782‑M2/8‑100 (MQ=255)

                                                                                              ccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGCCGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCa     >  1:1022871‑M2/6‑100 (MQ=255)

                                                                                               cggcCTACATTCTTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCTCGGACTTAGCGTTATTGCTTCAGCACCGCACGAcc       <  2:164312‑M2/93‑1 (MQ=255)

                                                                                               cggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAg    <  1:1424692‑M2/96‑1 (MQ=255)

                                                                                               cggcCTACATTCATGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAg    >  1:1743466‑M2/5‑100 (MQ=255)

                                                                                                ggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGc   <  2:2278993‑M2/97‑1 (MQ=255)

                                                                                                 gcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCg  >  1:2080812‑M2/3‑100 (MQ=255)

ACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTTGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGTAAACGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCG  >  NC_000913/39082‑39278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.