New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	228721 =	NA (NA)	29 (0.320)	9/166	NT	NA	intergenic (+59/‑35)	rrlH/rrfH	23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
	?	NC_000913	228745 =	NA (NA)					intergenic (+83/‑11)	rrlH/rrfH	23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon

CGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG  >  NC_000913/228647‑228822                                                                                                   |                                                                              cGTGATGCTTAACCTTACAACGTCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                                               <  1:2545317/99‑1 (MQ=12) cGTGAGGCTTAACCTTACAACGCCGAAGCTGTTGTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaa                                                                              <  2:2531678/100‑1 (MQ=17)  gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCATATCGCAGAAGCGGTCTGATaaa                                                                             <  2:648300/100‑1 (MQ=12)   tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa                                                                            <  2:2472948/100‑1 (MQ=33)    gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                                           <  1:543020/100‑1 (MQ=32)    gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                                           <  1:2041730/100‑1 (MQ=32)      ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAg                                                                         >  1:240793/1‑100 (MQ=33)      ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATAAGAACGCAGAAGCGGTCTGATAAAACAg                                                                         >  1:560125/1‑100 (MQ=17)       gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa                                                                        >  1:2228062/1‑100 (MQ=33)          tAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAtt                                                                     >  1:2196836/1‑100 (MQ=33)           aaCCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAttt                                                                    >  1:1006488/1‑100 (MQ=33)            aCCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTg                                                                   <  1:47112/100‑1 (MQ=32)            aCCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTg                                                                   >  1:728493/1‑100 (MQ=33)             ccTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGc                                                                  <  1:474844/100‑1 (MQ=32)              cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGTGGTCTGATAAAACAGAATTTGcc                                                                 <  1:1236909/100‑1 (MQ=18)               ttACAACGCCGAAGCTGTTTTGGCGGATTGAGAAAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCt                                                                >  2:1590575/1‑100 (MQ=18)                  cAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc                                                             >  1:2369255/1‑100 (MQ=33)                     cGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcggc                                                          >  2:2376513/1‑100 (MQ=33)                     cGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcggc                                                          >  2:615710/1‑100 (MQ=33)                      gCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGcc                                                         <  1:1874561/100‑1 (MQ=33)                        cGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGt                                                       <  1:1962020/100‑1 (MQ=35)                         gAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa                                                      <  1:570489/100‑1 (MQ=35)                         gAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa                                                      >  1:320524/1‑100 (MQ=35)                          aaGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAg                                                     <  2:131240/100‑1 (MQ=35)                               gTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                                                >  2:2107883/1‑100 (MQ=33)                               gTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                                                >  1:808820/1‑100 (MQ=32)                               gTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                                                >  1:1065378/1‑100 (MQ=32)                               gTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                                                >  2:1725972/1‑100 (MQ=32)                                ttttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggt                                               >  1:1117628/1‑100 (MQ=32)                                 tttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtg                                              <  2:1975712/100‑1 (MQ=33)                                   tGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtggt                                            >  1:723376/1‑100 (MQ=33)                                    ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                           <  1:1953852/100‑1 (MQ=33)                                    ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                           >  2:217991/1‑100 (MQ=33)                                    ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                           >  1:348403/1‑100 (MQ=32)                                    ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGACGTAGCGCGGTGGTc                                           >  1:2620496/1‑100 (MQ=17)                                    ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAACCAGAACGCAGAAGCGGTCCGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                           >  2:807659/1‑100 (MQ=16)                                     gCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                          <  2:1380667/100‑1 (MQ=32)                                       ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACTCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa                                        <  1:38253/100‑1 (MQ=18)                                       ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa                                        <  1:1025096/100‑1 (MQ=33)                                         aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                                      <  2:1494642/100‑1 (MQ=31)                                         aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                                      <  1:732207/100‑1 (MQ=31)                                                                                    cAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGACGTAGCGCGGTGGTCACATCTAACACCATGCGGAACTCAGCAGTTCAAGTCCGTAg  >  2:601904/1‑93 (MQ=1)                                                                                                   |                                                                              CGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG  >  NC_000913/228647‑228822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.