New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1062411 =NA (NA)4 (0.040) 3/166 NT NA noncoding (5/134 nt) REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 1062444 = NA (NA)noncoding (38/134 nt) REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 106 total aligned reads displayed.

GCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAA  >  NC_000913/1062345‑1062543
                                                                                                   |                                                                                                   
gCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTATACGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCa                                                                                                     >  1:658012/1‑100 (MQ=255)
acaaagattacagttcctgtgggccggataagacgttcacgccgcatccggcaactgcgccataatGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCa                                                                                                     >  1:2126428‑M1/67‑100 (MQ=255)
 caaagattacagttcctgtgggccggataagacgttcacgccgcatccggcaactgcgccataatGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCAt                                                                                                    >  1:164465‑M1/66‑100 (MQ=255)
   cTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTa                                                                                                  >  1:178132/1‑100 (MQ=255)
   cTAAGCCAGTTATTGCTGGAGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAAGCGTTTAGCGTCGCATCAGGCact                                                                                                   >  2:31317/1‑97 (MQ=255)
       gCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGgc                                                                                              <  2:20862/100‑1 (MQ=255)
       gCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGgc                                                                                              >  1:2218676/1‑100 (MQ=255)
           gTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAg                                                                                          >  1:1337452/1‑100 (MQ=255)
           gTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAg                                                                                          <  2:2139781/100‑1 (MQ=255)
              aTTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAATACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTg                                                                                       <  2:1628359/100‑1 (MQ=255)
                tGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGcc                                                                                     <  2:1734472/100‑1 (MQ=255)
                tGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGcc                                                                                     <  2:1734640/100‑1 (MQ=255)
                 gCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCg                                                                                    >  2:369143/1‑100 (MQ=255)
                   tGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGa                                                                                  <  2:2218649/100‑1 (MQ=255)
                      cttccgatctgTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgc                                                                               <  2:898162/90‑1 (MQ=255)
                       gtTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcg                                                                              >  1:938823/1‑100 (MQ=255)
                          aGTGGAGTGCGACCACCAAAACAGATAACGTTGTTTGTGCGCCTGAAAAGAGGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcggcg                                                                           <  1:1001429/100‑1 (MQ=255)
                          aGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTTCGCCTGAAAAGACGCGATTAGCGGCGCAGCAGGCAATAGCGCGCAGGGGCCGGATg                                                                                >  2:1976623/1‑95 (MQ=255)
                          aGTGGAGTGCGACCACCAAAAAAGATAACGTCGTTTGTGCGGGTGAAAAGACGCGTTTAGCGTAGCATCAGGCATTATGGCGCAGTTGCCGCATgcggcg                                                                           >  2:749280/1‑100 (MQ=255)
                           gTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGt                                                                          <  2:1008989/100‑1 (MQ=255)
                           gTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGt                                                                          <  2:1623651/100‑1 (MQ=255)
                           gTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGATTAGCGTCGCATCAGGCATTATGGCGCACTTGCCGGCTgcggc                                                                            >  2:505945/1‑98 (MQ=255)
                            tGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGTGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTg                                                                         <  2:2535286/100‑1 (MQ=255)
                            tGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTg                                                                         <  1:2293618/100‑1 (MQ=255)
                              gAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGa                                                                        <  2:761954/99‑1 (MQ=255)
                               aatGCGACCACCAAAACAGATAACGACGTTTGGGCGCCTGAAAAGACGCGTTTAGCCTCGCATCAGGCATTAGTGCGCAGTTGCCGGATGCGGCGTGAAc                                                                      <  2:2465410/98‑1 (MQ=37)
                               aGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAAc                                                                      >  1:1452410/1‑100 (MQ=255)
                                gTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATgcagatcggaag                                                                     >  1:898171/1‑90 (MQ=255)
                                gTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACg                                                                     <  1:1737273/100‑1 (MQ=255)
                                gTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACg                                                                     <  1:869500/100‑1 (MQ=255)
                                  gCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGt                                                                    >  2:167604/1‑99 (MQ=255)
                                  gCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGAAGCGTTTAGCGTCGCAAAAGGCATTATGGCGCAGTTGCCGGATGCGGCGAGAACgcc                                                                   >  1:878280/1‑98 (MQ=38)
                                   cGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCt                                                                  >  1:1253176/1‑100 (MQ=255)
                                   cGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCt                                                                  >  1:219394/1‑100 (MQ=255)
                                   cGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCt                                                                  >  2:310585/1‑100 (MQ=255)
                                   cGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCt                                                                  <  2:2405691/100‑1 (MQ=255)
                                    gACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCtt                                                                 <  2:1226853/100‑1 (MQ=255)
                                      ccaccaAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTAt                                                               >  1:2253390/1‑100 (MQ=255)
                                       caccaAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATc                                                              >  2:1593297/1‑100 (MQ=255)
                                        accaAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATcc                                                             >  2:1646832/1‑100 (MQ=255)
                                        accaAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATcc                                                             >  2:627676/1‑100 (MQ=255)
                                         ccaAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCg                                                            <  1:732353/100‑1 (MQ=255)
                                            aaaCAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGcc                                                         <  1:1110720/100‑1 (MQ=255)
                                               cAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCcac                                                      >  1:600016/1‑100 (MQ=255)
                                                aGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCcaca                                                     >  2:794573/1‑100 (MQ=255)
                                                  aTAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAgg                                                   >  2:702297/1‑100 (MQ=255)
                                                   tAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGa                                                  >  1:2339497/1‑100 (MQ=255)
                                                      cgtcgtTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACt                                               >  2:4104/1‑100 (MQ=255)
                                                      cgtcgtTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACt                                               <  2:2595535/100‑1 (MQ=255)
                                                      cgtcgtTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACt                                               <  2:2585627/100‑1 (MQ=255)
                                                       gtcgtTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTg                                              >  1:1178420/1‑100 (MQ=255)
                                                       gtcgtTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTg                                              >  1:2302994/1‑100 (MQ=255)
                                                        tcgtTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGt                                             <  1:729992/100‑1 (MQ=255)
                                                           tttGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAt                                          <  1:593657/100‑1 (MQ=255)
                                                            ttGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATc                                         <  2:2398353/100‑1 (MQ=255)
                                                              gtgCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCtt                                       >  2:1240990/1‑100 (MQ=255)
                                                              gtgCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCtt                                       >  1:2651031/1‑100 (MQ=255)
                                                               tgCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCttt                                      <  2:704933/100‑1 (MQ=255)
                                                               tgCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCttt                                      <  1:2450495/100‑1 (MQ=255)
                                                                gcgcCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTg                                     <  1:1023905/100‑1 (MQ=255)
                                                                gcgcCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGACCCACAGGAACTGTAATCTTTg                                     >  1:921527/1‑100 (MQ=255)
                                                                atgcctgatgcgacgctaaacgcgtcttttcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTg                                     >  1:164465‑M2/36‑100 (MQ=255)
                                                                 tgcctgatgcgacgctaaacgcgtcttttcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGt                                    >  1:2126428‑M2/35‑100 (MQ=255)
                                                                 gatCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGt                                    >  1:1574994‑M1/4‑100 (MQ=255)
                                                                  gcctgatgcgacgctaaacgcgtcttttcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACACGAACTGTAATCTTTGt                                    >  2:710241‑M2/34‑99 (MQ=255)
                                                                  GCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTTAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTa                                   >  2:538532‑M1/1‑100 (MQ=255)
                                                                   CCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAg                                  <  1:1567066‑M1/100‑1 (MQ=255)
                                                                   CCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAg                                  >  1:1879201‑M1/1‑100 (MQ=255)
                                                                     gGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGAc                                <  2:2526244‑M1/99‑1 (MQ=255)
                                                                      GAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTagatc                               <  2:1574978‑M1/100‑3 (MQ=255)
                                                                      GAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGAcc                               <  2:1591879‑M1/100‑1 (MQ=255)
                                                                        aaaGACGCGTTTAGTGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAg                                  >  2:490646/1‑95 (MQ=255)
                                                                        aaaGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCgg                             <  2:2354146/100‑1 (MQ=255)
                                                                           gACGCGTTTAGCGTTGCATCAGGTATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTa                          <  1:385737/100‑1 (MQ=255)
                                                                           gACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTa                          <  2:2137739/100‑1 (MQ=255)
                                                                           gACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTa                          >  2:1550205/1‑100 (MQ=255)
                                                                             cgcgTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGACGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTaa                         <  2:817692/99‑1 (MQ=255)
                                                                              gcgTTTAGCTACGCATCATGCATTATTGGTAATTTTCCTGATGCGGTGTGAACGTCTTATCCTGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAg                        <  2:18503/99‑1 (MQ=255)
                                                                               cgTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGAt                      >  1:278572/1‑100 (MQ=255)
                                                                                 tttAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGTCGTGAACGTCTTATCCGGCACACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGc                    <  2:3062/100‑1 (MQ=255)
                                                                                  ttAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCg                   <  1:70793/100‑1 (MQ=255)
                                                                                   tAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGt                  <  2:863447/100‑1 (MQ=255)
                                                                                   tAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGt                  <  2:229478/100‑1 (MQ=255)
                                                                                    aGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTAAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGCTGCGt                  >  2:527741/1‑99 (MQ=255)
                                                                                     gCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCa                <  1:2320163/100‑1 (MQ=255)
                                                                                       gTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATc              <  2:1253164/100‑1 (MQ=255)
                                                                                        tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCTGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCg             <  1:167605/100‑1 (MQ=255)
                                                                                        tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCg             <  1:2598550/100‑1 (MQ=255)
                                                                                        tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCg             <  2:219392/100‑1 (MQ=255)
                                                                                        tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCg             <  1:369145/100‑1 (MQ=255)
                                                                                          gCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCa           <  1:2608243/100‑1 (MQ=255)
                                                                                          gCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCa           <  1:573321/100‑1 (MQ=255)
                                                                                          gCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCa           <  2:1551864/100‑1 (MQ=255)
                                                                                            aTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATc         <  1:389212/100‑1 (MQ=255)
                                                                                             tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATcc        <  1:2034272‑M2/94‑1 (MQ=255)
                                                                                              caggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCg       >  1:2188775‑M2/6‑100 (MQ=255)
                                                                                                ggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCg       <  1:2659173‑M2/95‑1 (MQ=255)
                                                                                                ggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGc     >  1:1140466‑M2/4‑100 (MQ=255)
                                                                                                ggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGc     >  1:2330992‑M2/4‑100 (MQ=255)
                                                                                                   aTTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCaaa  >  2:670571/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAA  >  NC_000913/1062345‑1062543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.