New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2041150	NA (NA)	8 (0.080)	7/182	13.2	NA	intergenic (+32/‑225)	yedZ/zinT	inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic
	?	NC_000913	= 2041182	NA (NA)					noncoding (31/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCtgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2041052‑2041150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTACTTTGTCGGCAATATGAAGTTATACAGATAATTTGTTGTGAACCTGCTTGCGTAACCGG  <  NC_000913/2041182‑2041079                                                                                                                                                                                                             GTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCT                                                                                                         >  2:1135410/1‑100  TATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTG                                                                                                        >  2:568398/1‑100   ATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGC                                                                                                       >  1:1807728/1‑100    TAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCC                                                                                                      <  2:1463116/100‑1    TAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGAAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCC                                                                                                      >  1:1902225/1‑100     AAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCG                                                                                                     >  1:1098262/1‑100      AGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGG                                                                                                    <  2:1861548/100‑1      AGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGG                                                                                                    <  1:2267774/100‑1      AGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGG                                                                                                    >  2:1684339/1‑100                           ACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATC                                                                               >  1:139564/1‑100                             CGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTACCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCG                                                                             <  1:1856848/100‑1                               GTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCATATCCGGC                                                                           <  1:1513786/100‑1                               GTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGC                                                                           <  2:1215816/100‑1                                TTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCA                                                                          <  2:325611/100‑1                                   CGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCAGGG                                                                       <  2:1902240/100‑1                                         CAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACG                                                                 <  2:139564/100‑1                                             TTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTA                                                             <  1:1317728/100‑1                                                                                                      CCGGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTACTTTGTCGGCAATATGAAGTTATACAGATAATTTGTTGTGAACCTGCTTGCGTAACC    >  2:2624992/1‑100                                                                                                      CCGGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTACTTTGTCGGCAATATGAAGTTATACAGATAATTTGTTGTGAACCTGCTTGCGTAACC    <  1:1536389/100‑1                                                                                                        nGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTACTTTGTCGGCAATATGAAGTTATACAGATAATTTGTTGTGAACCTGCTTGCGTAACCGG  >  1:2220705/2‑100                                                                                                        GGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGGGTACTTTGTCGGCAATATGAAGTGGTACAGATAATTTGTTGTGAACCTGCTTGCGTAACCGG  >  1:668270/1‑100                                                                                                        GGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTACTTTGTCGGCAATATGAAGTTATACAGATAATTTGTTGTGAACCTGCTTGCGTAACCGG  >  2:490296/1‑100                                                                                                                                                                                                             GTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCtgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2041052‑2041150 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATAGGGCGCTCGCGCCACATCCGGCAGGGATAACGCGTACTTTGTCGGCAATATGAAGTTATACAGATAATTTGTTGTGAACCTGCTTGCGTAACCGG  <  NC_000913/2041182‑2041079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.