New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3548549	102 (0.900)	5 (0.060) +TTTTTTTTTAATGATACGGCGACC	4/150	13.5	6.1%	coding (1522/2085 nt)	malQ	4‑alpha‑glucanotransferase (amylomaltase)
	?	NC_000913	3548574 =	103 (0.910)					coding (1497/2085 nt)	malQ	4‑alpha‑glucanotransferase (amylomaltase)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

TTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3548488‑3548549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCG  >  NC_000913/3548574‑3548632                                                               ||||||||||||||||||||||||                                                            TTCTCGTGGTCGTTTTCGAAATAGAGCATTTTTTAAGAGAACACACCGCCGCTGCGCAGCTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACAC                                               <  1:1623229/100‑1  ttttgttGTCGTTTTCTAAATAGAGCATTTTGTATGAGTACACACCGCTGCTGCGCAGTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACC                                              <  1:1842226/93‑1                 CGAAATAGAGCACTTTGTAAGAGTACGCACCGCTGCTGCGCAGTTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCG                               <  1:1953998/100‑1                        GAGCTCTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTTTTTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACG                         <  1:2631950/99‑1                                              CCGCTGCTGCGCAGCTTATTGTTTTTAATGATACGTCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCG  <  1:1134258/100‑1                                                               ||||||||||||||||||||||||                                                            TTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3548488‑3548549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCG  >  NC_000913/3548574‑3548632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.