Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,767,4381.C74.4% 229.0 / 80.9 88intergenic (+83/‑272)rnlB/yfjPCP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
Reads supporting (aligned to +/- strand):  ref base . (20/2);  new base C (8/56);  total (30/58)
Fisher's exact test for biased strand distribution p-value = 3.07e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 110 total aligned reads displayed.

GTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACC  >  NC_000913/2767340‑2767531
                                                                                                    |                                                                                                 
gTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑aa                                                                                                    >  1:2093561/1‑99 (MQ=255)
gTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑aa                                                                                                    >  1:2507917/1‑99 (MQ=255)
 tCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c                                                                                                <  1:193254/100‑1 (MQ=255)
  cAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑aaaa                                                                                                  >  1:1067596/1‑97 (MQ=255)
   aaTGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑c                                                                                            >  2:1176648/1‑100 (MQ=255)
   aaTGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGAATT‑aaaata                                                                                                >  2:532852/1‑96 (MQ=255)
      ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑c                                                                                        <  1:1399636/100‑1 (MQ=255)
       gATTTTTGAAACTCTTCTTTCTCAACGAACCGGTATACAATTCGCCCATTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cc                                                                                       <  1:1948470/100‑2 (MQ=255)
       gATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cc                                                                                       <  1:2348611/100‑2 (MQ=255)
        aTTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑aaagtaac                                                                                              >  2:2287390/1‑91 (MQ=255)
        aTTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cct                                                                                      >  2:1394018/1‑98 (MQ=255)
         tttttGATACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AT‑c‑c‑c‑ccc‑cctn                                                                                     <  1:1553022/100‑4 (MQ=255)
         tttttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cctc                                                                                     <  2:1924566/100‑4 (MQ=255)
          ttttGAAACTCTTCTGTCTAACCGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAAAAGGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cctca                                                                                    <  2:2836613/100‑5 (MQ=255)
           tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cctcac                                                                                   <  2:1040549/100‑6 (MQ=255)
           tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cctcac                                                                                   <  1:1213663/100‑6 (MQ=255)
           tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cctcac                                                                                   <  1:1183365/100‑6 (MQ=255)
           tttAAACCTGTTCTTTCTAAACGAACCAGTATAGAATGCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑c‑c‑ccc‑cctca                                                                                    <  2:62761/99‑5 (MQ=255)
              gAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGACCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑CTA‑A‑CCC‑CTcaca                                                                                   >  1:1538207/1‑98 (MQ=255)
               aaaCTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACg                                                                                <  1:844203/100‑1 (MQ=255)
               aaaCTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACg                                                                                <  2:742226/100‑1 (MQ=255)
               aaaCTCTTCTTGCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCAAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACg                                                                                <  1:913611/100‑1 (MQ=255)
                aaCTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGACCAAATAGCATT‑AA‑c‑c‑c‑cctcctc                                                                                      >  1:1155602/1‑88 (MQ=255)
                  ctctTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTcc                                                                             <  1:1233488/100‑1 (MQ=255)
                   tcttctTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑C‑C‑CCC‑CTCACAACGTCCTg                                                                           <  2:2301653/100‑1 (MQ=255)
                    cttcttTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTg                                                                           <  1:2855097/100‑1 (MQ=255)
                    cttcttTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTg                                                                           <  2:1244820/100‑1 (MQ=255)
                     ttctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGc                                                                          <  1:2645862/100‑1 (MQ=255)
                     ttctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGc                                                                          <  2:303162/100‑1 (MQ=255)
                     atctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGc                                                                          <  2:271229/99‑1 (MQ=255)
                      tctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCa                                                                         <  1:2349576/100‑1 (MQ=255)
                       ctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATa‑aaaaccc                                                                                               >  1:2803082/1‑76 (MQ=255)
                       ctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCAt                                                                        <  2:543421/100‑1 (MQ=255)
                        tttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATa                                                                       <  1:325773/100‑1 (MQ=255)
                        tttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATa                                                                       <  2:790402/100‑1 (MQ=255)
                         ttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCagat                                                                      >  1:271228/1‑97 (MQ=255)
                         ttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAg                                                                      >  2:242949/1‑100 (MQ=255)
                          tctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAgg                                                                     <  2:2149792/100‑1 (MQ=255)
                          tctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAgg                                                                     <  2:101739/100‑1 (MQ=255)
                            tAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGa                                                                   <  2:694139/100‑1 (MQ=255)
                                  aaCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGt                                                             <  1:217330/100‑1 (MQ=255)
                                  aaCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑CTT‑C‑CCC‑CTCACAACATCCTACATATTGAacactt                                                             >  1:1380384/1‑98 (MQ=255)
                                      aGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑C‑CACCT‑CTCACCACGTCCTGCATAGCGAACACGTTTTc                                                         >  1:2776447/1‑100 (MQ=255)
                                      aGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑C‑CACCC‑ATCCCACAATCCTGCATAGGGAACAAGTTTTc                                                         >  1:1190290/1‑100 (MQ=255)
                                       gTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTcc                                                        <  2:1376825/100‑1 (MQ=255)
                                        tataGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTccc                                                       <  2:419988/100‑1 (MQ=255)
                                         ataGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTcccc                                                      >  1:202174/1‑100 (MQ=255)
                                           aGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑C‑A‑CCC‑CTCACAACATCATGCATAGAAAACACATATTCCCCt                                                     >  1:383227/1‑99 (MQ=255)
                                           aGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCtg                                                    <  2:599720/100‑1 (MQ=255)
                                            gAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑C‑A‑CCC‑GTCACAATGACCTGCATATGGGACACGtttgcaccag                                                    >  2:2338940/1‑92 (MQ=255)
                                            gAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCtgt                                                   >  2:1447470/1‑100 (MQ=255)
                                            gAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑C‑C‑CCCACTCAAAACGTCCTGCATAGCAAACACGATTACCCTtga                                                   >  2:485541/1‑99 (MQ=255)
                                             aagtCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAGC‑C‑C‑CCC‑CTCACAACGTCCCGCATAGGGAAAACGTTTCCCCCtct                                                   >  1:1030074/4‑97 (MQ=255)
                                             aaTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCtgtg                                                  <  1:918246/100‑1 (MQ=255)
                                             aaTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCtgtg                                                  <  2:1819096/100‑1 (MQ=255)
                                              aTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACACCGTCCTGCATCGGGAACACGTTTTCCCCTGTGc                                                 >  1:2253712/1‑100 (MQ=255)
                                              aTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGc                                                 <  2:1157615/100‑1 (MQ=255)
                                               ttCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑T‑T‑TCC‑TTCACGACGTCTTGCATAAGTAACACGTTTTACCCTGTGc                                                 >  1:1866084/1‑98 (MQ=255)
                                                tCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑C‑A‑CCC‑CTAACAAAGTCCAGCATAACAAACAAGTTTAcccatcggaa                                                >  2:2413264/1‑92 (MQ=255)
                                                 cGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc                                              <  1:1149616/100‑1 (MQ=255)
                                                  gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAccc                                             <  2:219090/100‑1 (MQ=255)
                                                   cccTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCa                                            <  2:1925838/100‑1 (MQ=255)
                                                   cccTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCa                                            <  1:1394010/100‑1 (MQ=255)
                                                    ccTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑CTA‑A‑CCC‑CTCACAACAGCCTGCATAGGTATCAAGTTTTCCCATGTGCAc                                               >  1:66768/1‑96 (MQ=255)
                                                     cTTTTGGCATGATATTAACTTGTCCCATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACg                                          <  2:570229/100‑1 (MQ=255)
                                                       tttGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGAc                                        <  2:2414244/100‑1 (MQ=255)
                                                       tttGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGAc                                        <  2:817130/100‑1 (MQ=255)
                                                       tttGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTATTCCCCTGTGCACCCACGAc                                        <  1:1759844/100‑1 (MQ=255)
                                                           gCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑CAG‑CCA‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCACTGTGAAAACACGACTaa                                     >  1:1469137/1‑99 (MQ=255)
                                                            cATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAAt                                   <  2:2095936/100‑1 (MQ=255)
                                                               gATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTT‑CCCTGTGCACCCACGACTAAATTTcc                               <  1:1176643/100‑1 (MQ=255)
                                                                atatTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTcc                               <  1:242948/100‑1 (MQ=255)
                                                                atatTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTcc                               <  1:2107621/100‑1 (MQ=255)
                                                                atatTAACTTGTCCAATATGATCAAATAGCATT‑AA‑CTC‑C‑CTC‑CTCACAACTTCCTGCATAGGATAAACGTATTCCCTTCTGCACCCACGACTAAtttt                                 >  1:1977315/1‑98 (MQ=255)
                                                                 tatTAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑C‑C‑CAC‑ATCCCAACGTCCTGAATACGCCACACGTTTTCCCCTGTGCACCCACGACTAAATTcccc                              >  1:1892863/1‑100 (MQ=255)
                                                                 tatTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc                              <  1:1447460/100‑1 (MQ=255)
                                                                 tatTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc                              <  1:2259892/100‑1 (MQ=255)
                                                                  atTAACTTGTCCAATATGATCAAATAGCATT‑AATC‑A‑A‑CTC‑CTCACAACGTGCTGCATAGCGTAAACGTTTTCCCATATTCACCCACGACTAAATTTcccc                             >  1:2036148/1‑100 (MQ=255)
                                                                  atTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTcccc                             <  2:202175/100‑1 (MQ=255)
                                                                   ttAACTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccccc                            <  1:1407054/100‑1 (MQ=255)
                                                                    tAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑C‑C‑CTT‑CTCCCAACGTACCGCACAGCAAAAACATTTTCCCCTTTGCACCCACGCCTAAATTTcccc                             >  1:360479/1‑98 (MQ=255)
                                                                     aaCTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccccccc                          <  1:2338922/100‑1 (MQ=255)
                                                                      aCTTGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccccccc                          <  1:1797106/99‑1 (MQ=255)
                                                                       cctGTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCtt                        <  1:987044/98‑1 (MQ=255)
                                                                         tGTCCAATATGATCAAATAGCATTAAA‑C‑C‑C‑CCC‑CTCTAAACGTCCTAATTACGGAACACGATTTACACTGTGAACCTAGGACTAAATTTCCCACCATTTa                      >  2:48679/1‑100 (MQ=255)
                                                                          gTCCAATATGATCAAATAGCATTAAA‑A‑A‑C‑CCC‑CTAAGACCTTGCTACATAGGGAACACGATTTCCCCAGCGCACCCACGACTAAATTTCGCCCCCTTTaa                     >  2:2033456/1‑100 (MQ=255)
                                                                          gTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTaa                     <  2:1196175/100‑1 (MQ=255)
                                                                          gTCCAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGAAAAACGTTTTCCCCTGTTCACCAACGACTAAATTTCCCCCCCTCTa                      >  1:2489870/1‑99 (MQ=255)
                                                                            ccAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAAc                   <  1:869167/100‑1 (MQ=255)
                                                                            ccAATATGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTACATAGGAAACACGTTTTCCCCTGTGCACCCACTACTGAATTTCACTCCCTTTa                      >  1:206232/1‑97 (MQ=255)
                                                                             cAATATGATCAAATAGCATTAAA‑A‑C‑A‑TCC‑CTCTCATCGTCCTGTATACGGAAGACATTTTTCCCTGTGCGCCCATCTCTAAATTTCCCTCCCTGTAAAcg                  >  2:2169372/1‑99 (MQ=255)
                                                                                 atGATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTtctc              <  2:2187083/100‑1 (MQ=255)
                                                                                   gATCAAATAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCaa            <  1:2517575/100‑1 (MQ=255)
                                                                                       aaaTAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCaataat        <  2:635926/100‑1 (MQ=255)
                                                                                       aaaTAGCATT‑AA‑C‑C‑C‑CCCTCTCGCAGCGGCCTCAATAGGAATCACGTTTCCGCCAGCGCGACCACGCAAAAATTTACCCCCCTTTACACttacccataac        >  1:2730324/1‑91 (MQ=255)
                                                                                        aaTAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATg       <  2:2580652/100‑1 (MQ=255)
                                                                                        aaTAGCATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATg       <  1:48679/100‑1 (MQ=255)
                                                                                        aaTAGCATT‑AA‑C‑C‑CACCC‑CTCACAACGTCCTGAATAGGGAACACGCTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTCAAGTCCTAaagaat        >  1:373098/1‑99 (MQ=255)
                                                                                             cATT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCAcc  <  1:1281180/100‑1 (MQ=255)
                                                                                              aTT‑AACC‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCAcc  <  1:798516/99‑1 (MQ=255)
                                                                                                    |                                                                                                 
GTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑C‑C‑CCC‑CTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACC  >  NC_000913/2767340‑2767531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑