Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,397,557 | G→T | G49V (GGT→GTT) | mutL → | methyl‑directed mismatch repair protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,397,557 | 0 | G | T | 98.8% | 306.5 / NA | 85 | G49V (GGT→GTT) | mutL | methyl‑directed mismatch repair protein |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (47/37); total (48/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGAGGTGGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATC > NC_000913/4397461‑4397651 | gtgaggtgGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTgg > 2:1415314/1‑100 (MQ=255) tgaggtgGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTggg < 2:970434/100‑1 (MQ=255) gaggttGGCGAGGGATCTGCGTCGATAGTCAAGGAACTGGTGCAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTaggg < 1:2701759/100‑1 (MQ=255) gaggtgGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTgggg < 1:2561848/100‑1 (MQ=255) tggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaa < 2:29263/100‑1 (MQ=255) ggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCCGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaaa > 2:1716350/1‑100 (MQ=255) ggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaaa > 1:2682593/1‑100 (MQ=255) ggtCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGaaa < 2:197473/100‑1 (MQ=255) cGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACtt > 2:2549179/1‑100 (MQ=255) cGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACtt > 2:1343818/1‑100 (MQ=255) gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg > 1:2730856/1‑100 (MQ=255) gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg < 2:1054638/100‑1 (MQ=255) gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg > 2:1304654/1‑100 (MQ=255) gACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCg < 1:1976146/100‑1 (MQ=255) ccTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCa > 2:623678/1‑100 (MQ=255) ccTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCa < 2:523320/100‑1 (MQ=255) tGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCAtt < 2:533620/100‑1 (MQ=255) gTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGt < 1:63437/100‑1 (MQ=255) tCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTg < 1:1936365/100‑1 (MQ=255) cGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGa > 1:642791/1‑100 (MQ=255) cGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGa > 2:607603/1‑100 (MQ=255) ggTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGAt > 1:2243698/1‑100 (MQ=255) ggTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGAt > 1:1336169/1‑100 (MQ=255) ggTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGAt > 2:8337/1‑100 (MQ=255) gTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATa < 1:969718/100‑1 (MQ=255) aGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAAc > 1:2690391/1‑100 (MQ=255) gTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACg > 1:384395/1‑100 (MQ=255) cAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGc > 2:1208278/1‑100 (MQ=255) cAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGc > 1:1830119/1‑100 (MQ=255) aaaGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCt > 2:1234094/1‑100 (MQ=255) aaGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTg < 2:384397/100‑1 (MQ=255) aGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGc < 1:2549157/100‑1 (MQ=255) aaCTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCgg < 2:659843/100‑1 (MQ=255) cTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTa < 1:854068/100‑1 (MQ=255) gTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCa > 2:2252833/1‑100 (MQ=255) gTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCa > 1:931307/1‑100 (MQ=255) ggAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCaaa > 2:2264396/1‑100 (MQ=255) aaCAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAg < 1:1886231/100‑1 (MQ=255) aCATCCTCGATGCAGGTGCGACTCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGa < 2:2695950/100‑1 (MQ=255) aGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCTGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATg < 2:2028765/100‑1 (MQ=255) aGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATg < 1:1415305/100‑1 (MQ=255) aGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATg < 2:1377363/100‑1 (MQ=255) ccTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAg < 2:2593809/100‑1 (MQ=255) cTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgc > 2:1369696/1‑100 (MQ=255) gATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctgg > 1:1303499/1‑100 (MQ=255) tGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAATAGATGAgctggag < 2:1956297/100‑3 (MQ=255) tGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGAAAAAAAAAAAAAAAAGATGAgctggcg < 1:623676/100‑1 (MQ=255) cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgct > 1:2608079/1‑100 (MQ=255) cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgct > 2:1525890/1‑100 (MQ=255) cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgc > 1:1248254/1‑99 (MQ=255) cAGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATAAAAAAAGATGAgctggcgct > 2:956603/1‑100 (MQ=255) aGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctg > 1:1271493/1‑100 (MQ=255) aGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctg < 1:1476424/100‑1 (MQ=255) aGGTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGAGAAACTTATCCGCATTCGTGATAACGGAAAAAAAAAAAAAAAAGATGAgctggcgctg < 1:470419/100‑1 (MQ=255) ggTGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctgg < 1:2526315/100‑1 (MQ=255) tGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctggcg < 2:1741434/100‑1 (MQ=255) tGCGACGCGTATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAgctggcgctggcg > 1:2266331/1‑100 (MQ=255) cgcgttCGATATCAATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCt > 2:338717/6‑100 (MQ=255) tATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGt > 1:1145603/1‑100 (MQ=255) tATCGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGt > 1:1148801/1‑100 (MQ=255) cGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCAt > 2:428114/1‑100 (MQ=255) cGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCAt < 2:931310/100‑1 (MQ=255) cGATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCAt > 2:1877758/1‑100 (MQ=255) gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg > 2:2175985/1‑100 (MQ=255) gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg > 2:2062919/1‑100 (MQ=255) gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg > 1:2884973/1‑100 (MQ=255) gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg > 2:353341/1‑100 (MQ=255) gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg < 2:1303506/100‑1 (MQ=255) gATATTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATg > 2:553910/1‑100 (MQ=255) ttccgatctCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGcc < 2:177602/92‑1 (MQ=255) tatTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGcc < 1:790051/100‑1 (MQ=255) tatTGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGcc < 2:1248260/100‑1 (MQ=255) ttGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccac > 1:898751/1‑100 (MQ=255) tGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacc < 2:2652567/100‑1 (MQ=255) tGATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacc < 2:853037/100‑1 (MQ=255) tGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCGGCGGTCTCAAAAAAGATGAGGTGGCGCTGGCGCTGGCTCGTCATGcc > 1:204933/1‑97 (MQ=255) gATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacca > 1:2768844/1‑100 (MQ=255) gATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacca > 1:901507/1‑100 (MQ=255) gATATCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccacca > 2:1441960/1‑100 (MQ=255) atatCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAg < 1:2525321/100‑1 (MQ=255) tatCGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGt > 2:548783/1‑100 (MQ=255) cGAACGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGccagatcggaa > 1:177601/1‑92 (MQ=255) aaCGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAAt > 2:1044632/1‑100 (MQ=255) aaCGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAAt < 1:1979228/100‑1 (MQ=255) aCGCGTTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATc > 1:1815332/1‑100 (MQ=255) | GTGAGGTGGTCGAGCGACCTGCGTCGGTAGTCAAAGAACTAGTGGAAAACAGCCTCGATGCAGGTGCGACGCGTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATC > NC_000913/4397461‑4397651 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |