| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 225277 = | NA (NA) | 13 (0.110) | 6/168 | NT | NA | noncoding (1507/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225299 = | NA (NA) | noncoding (1529/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
GTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/225380‑225277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT > NC_000913/225299‑225397 GTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTAC < 1:1100345/100‑1 tcggggcTTTACTGCTCATTTTCATTAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG > 1:1415848/8‑100 TAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG < 2:2144740/100‑1 TAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG < 1:2723176/100‑1 TAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG < 2:474508/100‑1 TAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG > 1:2050283/1‑100 AGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGG < 2:996650/100‑1 AGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGG < 1:406985/100‑1 AGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGG < 1:3135202/100‑1 GAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGT < 1:49420/100‑1 AGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGG < 1:2095783/98‑1 GGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGAACTGCAAAGTACGCTTCTTTAAGGTAAAAAAGTGATACAACCGCCGGTTTCCCTAC > 1:2916986/1‑95 ACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTTGGATCAC < 1:1713747/100‑1 ctttctATCAGACAATCTGTGTGAGCACTGCAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTA > 2:1838302/7‑100 CTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTG > 2:436585/1‑100 GGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACAAAGATTGTCTGAT‑GAAAATGAGCAG > 1:1574950/1‑100 TGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTA > 2:2528470/1‑100 GATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAA > 2:1235225/1‑100 ATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAA > 1:721663/1‑100 TCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAA > 2:579889/1‑100 TCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAA > 2:886119/1‑100 TCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAaaagcaag > 1:1718347/1‑92 CCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAaaagca > 1:1248283/1‑91 CCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAAC > 1:2963924/1‑100 CAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACC > 1:689100/1‑100 CGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTC > 2:1452880/1‑100 GGTTGGATCCCCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA < 2:1867665/100‑1 GGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA < 2:1486409/100‑1 GGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA < 1:802572/100‑1 GGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA > 1:3044048/1‑100 GGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA > 2:575244/1‑100 GTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAG > 2:141144/1‑100 GTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAG > 2:166055/1‑100 GTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAG < 1:57593/100‑1 GTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAG > 1:2031691/1‑100 GTTGGATCACCTCCCTACCTTAAAGTAGCGTACTTTGCAGTGCTCACCCAGATTGTCTGAT‑GAAAAGGAGCAGTAAAACCTCTACAGGCTTGTAGCTC < 1:1547362/98‑1 TTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGCGCAGTAAAACCTCTACAAGCCTGTAGaggttt < 2:3275562/100‑7 TTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGG < 1:2291448/100‑1 TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT > 1:1176126/1‑100 TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT < 1:2935904/100‑1 TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT > 2:2380739/1‑100 TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT < 2:1583438/100‑1 GTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/225380‑225277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT > NC_000913/225299‑225397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |