New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 707978	NA (NA)	5 (0.050) +GGATTGTTTGCTGT	5/150	NT	NA	intergenic (+221/‑356)	glnS/chiP	glutamyl‑tRNA synthetase/chitoporin, uptake of chitosugars
	?	NC_000913	= 3269824	NA (NA)					intergenic (+222/+801)	yhaC/garK	pentapetide repeats‑related protein/glycerate kinase I

TTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCA‑GCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/707883‑707978 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATA  <  NC_000913/3269824‑3269764                                                                                                  ||||||||||||||                                                              TTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCTGAAC‑GCGGCGTTTTGGAT                                                                         <  2:1743807/100‑1        TGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGC‑TGAACGCGGCGTTTTGGATTGTTTGC                                                                  <  1:405989/100‑1         GCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGC‑TGAACGCGGCGTTTTGGATTGTTTGCT                                                                 <  2:615396/100‑1                                                         AACAGCAAACAATCCAAAACGCCGCGTTCA‑GCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCATTATCCGGACTACAAAAGC                  >  2:671659/1‑99                                                                      CCAAAACGCCGCGTTCA‑GCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGGTGCGGCGTGAACGGCTTATCCGGCCTACAAAAGCACGCAAACTCAATA    >  2:2915391/1‑100                                                                       CAAAACGCCGCGTTCA‑GCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAACTCAATAT   >  2:2210362/1‑100                                                                       CAAAACGCCGCGTTCA‑GCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAACTCAATAT   >  2:403399/1‑100                                                                        AAAACGCCGCGTTCA‑GCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAACTCAATATA  >  1:3003332/1‑100                                                                                                  ||||||||||||||                                                              TTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCA‑GCGGCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/707883‑707978 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATA  <  NC_000913/3269824‑3269764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.