| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3898636 | NA (NA) | 6 (0.050) | 5/162 | NT | NA | noncoding (6/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3898650 | NA (NA) | noncoding (20/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3898530‑3898636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATA < NC_000913/3898650‑3898553 AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGCGATTTTTCGTAGTTATTTAAATAATGAGAACA < 2:2827281/100‑1 AAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAG > 2:3373715/1‑100 AAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAG < 1:408094/100‑1 GGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCC < 2:913141/100‑1 GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG < 2:3381928/100‑1 GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG < 2:15460/100‑1 GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGG < 2:3401696/100‑1 TGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA < 1:1017522/100‑1 GTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA > 1:2415684/1‑98 CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC < 1:1393443/100‑1 TTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATACTGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCT < 1:1848807/100‑1 TTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCT < 2:615682/100‑1 TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG < 1:2221993/100‑1 CCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT < 2:3115941/100‑1 TCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTGTCGTAGTTATTGAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCAT < 1:3300472/100‑1 GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG < 2:1204575/100‑1 GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG > 2:3122154/1‑100 GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGA < 1:3269269/98‑1 GCCGGATGTGTGAATTACGCTCCGTCCTTTTTTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCGCAGCTTGCCGCAGTGGAGACAGCGGAAGA < 2:2741949/100‑1 GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA < 2:216810/100‑1 GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA < 2:2436867/100‑1 GCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA < 2:408715/100‑1 CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCGCAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG < 2:2841648/100‑1 CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG > 2:1929524/1‑100 CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG < 1:2621982/100‑1 GGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT > 1:1484265/1‑100 GATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATA > 1:1728352/1‑100 GATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAATGGAGACAGCGGAAGAGATA > 1:1248588/1‑100 AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3898530‑3898636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATA < NC_000913/3898650‑3898553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |