New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381292 =	NA (NA)	13 (0.110)	19/160	NT	NA	noncoding (33/1331 nt)	IS2	repeat region
	?	NC_000913	381312 =	NA (NA)					noncoding (53/1331 nt)	IS2	repeat region

TACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATG  >  NC_000913/381213‑381353                                                                                                    |                                          tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                           >  1:408341/1‑100 (MQ=255) tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCACACTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                           <  1:1659924/100‑1 (MQ=255) tACGCCATTGCTGATTAGTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCACCATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg                                           <  1:1389425/100‑1 (MQ=255)   cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt                                          >  1:942225/1‑99 (MQ=255)   cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                         >  2:1078936/1‑100 (MQ=255)   cGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc                                         >  2:1038286/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                       <  2:940552/100‑1 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                       >  2:2938500/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                       >  2:2641712/1‑100 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                       <  2:2521956/100‑1 (MQ=255)     ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTACAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                       >  2:2938266/1‑100 (MQ=255)       aTTGTTTATTATTTTGCCAGGATGAATAAACGCATAATTACTATACTGGTTCCCTGAATCTCCATACAACCAATATCATTTAAATAAGTGATAGTCTTaa                                     <  1:544481/100‑1 (MQ=18)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                  >  1:138892/1‑100 (MQ=255)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                  <  2:1057787/100‑1 (MQ=255)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                  >  2:654659/1‑100 (MQ=255)          gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                  >  1:1583577/1‑100 (MQ=255)           cTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                 <  1:3140888/100‑1 (MQ=255)             gATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg                               >  1:1619640/1‑100 (MQ=255)             gATTAGTGTGCCAGGACGAATAAACACATAATTACTATACTGGCCCCCTGAATCTCCAAACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg                               <  1:1714747/100‑1 (MQ=18)                tattGTGCCAGGAAGAATACCCGAATAATTACTAGAATTGCCCCCAGAATCTACAGACAACCTATATCACTTAAATAAGTGATAGTCTTATTACTAg                               <  1:2366048/97‑1 (MQ=17)                 attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtttt                           >  2:633433/1‑100 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                          <  2:239290/100‑1 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                          <  1:28234/100‑1 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                          >  1:1116417/1‑100 (MQ=255)                  ttGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                          >  1:828202/1‑100 (MQ=255)                   tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                         <  2:1351607/100‑1 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                        >  2:2217186/1‑100 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAACAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                        <  1:2392682/100‑1 (MQ=255)                    gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCAACATGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                        <  1:1265127/100‑1 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                      >  1:1116667/1‑100 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                      <  2:1134797/100‑1 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                      >  2:2383663/1‑100 (MQ=255)                      gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                      >  2:2383693/1‑100 (MQ=255)                       ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                     >  1:1928563/1‑100 (MQ=255)                       ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                     <  2:2157081/100‑1 (MQ=255)                        cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTa                    >  1:144671/1‑100 (MQ=255)                         aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAg                   <  1:2036984/100‑1 (MQ=255)                         aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATAACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAg                   <  1:2176331/100‑1 (MQ=255)                          ggACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGt                  >  2:1460563/1‑100 (MQ=255)                          ggACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACATAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGt                  <  1:876832/100‑1 (MQ=255)                            aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTc                 <  1:1449340/99‑1 (MQ=255)                            aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCa                <  2:589240/100‑1 (MQ=255)                             cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt               >  2:3222741/1‑100 (MQ=255)                             cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAt               >  2:878297/1‑100 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAGTAGTTTTTAGACTAGTCATTgg            <  1:2007420/100‑1 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg            >  2:1138719/1‑100 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCATCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg            <  1:2177353/100‑1 (MQ=255)                                aTAAACGCATAATTACTAGACTGGCACCCTGAATCTTCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTCTAAAAACTAGtattaag            <  1:90471/100‑7 (MQ=14)                                aTAAACGCATAATTACTAGACTGGACCACTGAATCTCTAGACAAACAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg            <  1:38330/100‑1 (MQ=14)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCGGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga           >  1:1846811/1‑100 (MQ=255)                                 tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg            >  2:771396/1‑99 (MQ=255)                                   aaCGCATAATTACTATACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGga           <  2:1669454/98‑1 (MQ=255)                                    aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa        >  1:19303/1‑100 (MQ=40)                                      gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa      <  2:78790/100‑1 (MQ=38)                                       cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAg     <  2:1452999/100‑1 (MQ=38)                                       cATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAACATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAg     >  2:516150/1‑100 (MQ=255)                                        aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAga    <  2:2255299/100‑1 (MQ=35)                                         tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat   >  2:202856/1‑100 (MQ=35)                                         tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat   <  1:107613/100‑1 (MQ=35)                                         tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat   <  2:3370327/100‑1 (MQ=35)                                         tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat   <  2:2944788/100‑1 (MQ=35)                                          aaTTACTAGTCTGCCCACCTGAATCTCCAGACAACCTAGATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg  <  1:292389/100‑1 (MQ=11)                                          aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg  <  2:1692717/100‑1 (MQ=33)                                          aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat   >  1:2255656/1‑99 (MQ=33)                                           aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTAATTGGAGAACAgat   >  1:3094030/1‑98 (MQ=17)                                                                                                    |                                          TACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATG  >  NC_000913/381213‑381353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.