BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3255217 =	NA (NA)	5 (0.040)	4/164	NT	NA	noncoding (1/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	3255247 =	NA (NA)	5 (0.040)	4/164	NT	NA	noncoding (31/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 172 total aligned reads displayed.

TGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATC  >  NC_000913/3255149‑3255345

 tgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATCCGGCCTa                                                                                                  >  2:485960‑M1/68‑100 (MQ=255)

  gAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTAc                                                                                                 <  2:1179224/100‑1 (MQ=255)

   aaGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACa                                                                                                >  2:3340940/1‑100 (MQ=255)

   aaGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACa                                                                                                >  1:2735623/1‑100 (MQ=255)

    aGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCCGCAAAAACGCCTTAACCGGCCTACaa                                                                                               >  1:1264374/1‑100 (MQ=255)

      cTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACaaaa                                                                                             <  2:1076259/100‑1 (MQ=255)

       tATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAAt                                                                                            >  2:204561/1‑100 (MQ=255)

        aTCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATc                                                                                           <  2:3167184/100‑1 (MQ=255)

        aTCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATc                                                                                           >  2:1637323/1‑100 (MQ=255)

          cgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGTTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                                                         >  2:1160297/1‑100 (MQ=255)

          cgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                                                         >  1:1520550/1‑100 (MQ=255)

          cgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                                                         >  1:3327660/1‑100 (MQ=255)

          cgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                                                         <  2:846179/100‑1 (MQ=255)

          cgtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCca                                                                                         >  2:1558263/1‑100 (MQ=255)

           gtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaa                                                                                        >  2:1209724/1‑100 (MQ=255)

           gtcgCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaa                                                                                        >  2:1272994/1‑100 (MQ=255)

              gcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaacaa                                                                                     >  1:1000680/1‑100 (MQ=255)

              gcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaacaa                                                                                     <  2:3056489/100‑1 (MQ=255)

               agcttgtccggcgtacgggttgtttaattcgttaatgttgttggattttgtagGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCaacaac                                                                                    >  2:230140‑M1/54‑100 (MQ=255)

                     cTGAAACGCGTTTAGCCGCGGATGAAGCTACCGCGTACAGACAGGTTGCCGTATGCGGCGAAAACGCCTTATCAGGCCTACACAATCCAACAACATTaa                                                                               >  1:2449352/1‑99 (MQ=38)

                     cTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAAc                                                                              >  1:1670954/1‑100 (MQ=255)

                     cTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAAc                                                                              >  1:1826386/1‑100 (MQ=255)

                     cTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAAc                                                                              <  2:1718100/100‑1 (MQ=255)

                       gAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGa                                                                            >  1:3366249/1‑100 (MQ=255)

                        aaaCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGaa                                                                           >  2:699320/1‑100 (MQ=255)

                         aaCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAAt                                                                          <  2:2248261/100‑1 (MQ=255)

                         aaCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAAt                                                                          >  1:2798774/1‑100 (MQ=255)

                          aCGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAAtt                                                                         >  2:800768/1‑100 (MQ=255)

                           cgcgTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTa                                                                        <  2:1223367/100‑1 (MQ=255)

                               tttAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaaca                                                                    >  1:911127/1‑100 (MQ=255)

                                ttAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaacaa                                                                   >  2:1505479/1‑100 (MQ=255)

                                 tAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaacaac                                                                  <  2:1239646/100‑1 (MQ=255)

                                  aGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGTCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAcc                                                                 >  1:3150239/1‑100 (MQ=255)

                                  aGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAcc                                                                 <  1:2998711/100‑1 (MQ=255)

                                  aGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAcc                                                                 <  1:2067401/100‑1 (MQ=255)

                                   gCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAccc                                                                >  1:3100268/1‑100 (MQ=255)

                                   gCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAccc                                                                >  2:382404/1‑100 (MQ=255)

                                    ccGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCg                                                               <  1:3265543/100‑1 (MQ=255)

                                           tGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCg                                                        >  2:1549159/1‑100 (MQ=255)

                                           tGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCg                                                        >  1:235834/1‑100 (MQ=255)

                                           tGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCg                                                        >  2:1733654/1‑100 (MQ=255)

                                           tGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCg                                                        >  1:105629/1‑100 (MQ=255)

                                             aaGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGa                                                      <  1:230826/100‑1 (MQ=255)

                                              aGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCgg                                                       <  1:3335689/98‑1 (MQ=255)

                                              aGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGAc                                                     <  1:1082636/100‑1 (MQ=255)

                                               gCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACa                                                    >  2:213194/1‑100 (MQ=255)

                                                   gttgttggattttgtaggccggataaggcgttttcgccgcatccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTACGCCGGACaagct                                                >  2:230140‑M2/48‑98 (MQ=255)

                                                   ccGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt                                                >  1:1098866/1‑100 (MQ=255)

                                                   ccGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt                                                >  1:952809/1‑100 (MQ=255)

                                                    cgcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATg                                               <  1:396185/100‑1 (MQ=255)

                                                     gcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgc                                              >  1:493541/1‑100 (MQ=255)

                                                     gcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAACCGTAGGCCGGACAAGAt                                                >  1:3087504/1‑98 (MQ=255)

                                                      cgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcg                                             <  1:1581595/100‑1 (MQ=255)

                                                      cgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcg                                             <  1:1097245/100‑1 (MQ=255)

                                                        tAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc                                           <  1:3447236/100‑1 (MQ=255)

                                                          aaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg                                         <  2:2735644/100‑1 (MQ=255)

                                                          aaGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg                                         <  2:2735749/100‑1 (MQ=255)

                                                           aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgc                                        >  1:2462559/1‑100 (MQ=255)

                                                           aGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgc                                        >  1:376094/1‑100 (MQ=255)

                                                            gACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgca                                       >  1:113132/1‑100 (MQ=255)

                                                              cAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatc                                     <  2:391683/100‑1 (MQ=255)

                                                              cAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCCACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatc                                     >  1:1853299/1‑100 (MQ=255)

                                                               aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcg                                    <  1:1419457/100‑1 (MQ=255)

                                                                 gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgca                                  >  2:3252295/1‑100 (MQ=255)

                                                                 gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgca                                  >  1:1769767/1‑100 (MQ=255)

                                                                     ccggataaggcgttttcgccgcatccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCg                              >  1:3095420‑M2/30‑100 (MQ=255)

                                                                     CCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCg                              <  1:2618743‑M1/100‑1 (MQ=255)

                                                                       ggataaggcgttttcgccgcatccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCg                              >  1:1997418‑M2/28‑98 (MQ=255)

                                                                       ggataaggcgttttcgccgcatccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGc                            >  1:1435679‑M2/28‑100 (MQ=255)

                                                                       GGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGc                            <  2:1340808‑M1/100‑1 (MQ=255)

                                                                         ATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCAc                          >  2:852762‑M1/1‑100 (MQ=255)

                                                                            cggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAt                       >  1:2369370/1‑100 (MQ=255)

                                                                            cggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAt                       >  1:3132108/1‑100 (MQ=255)

                                                                            cggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAt                       >  2:61251/1‑100 (MQ=255)

                                                                             ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATc                      >  2:2572938/1‑100 (MQ=255)

                                                                             ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATc                      >  1:1335938/1‑100 (MQ=255)

                                                                             ggcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATc                      >  2:133544/1‑100 (MQ=255)

                                                                              gcgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATcc                     <  1:991099/100‑1 (MQ=255)

                                                                                 aaaaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCa                  <  2:1670970/100‑1 (MQ=255)

                                                                                  aaaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaa                 >  1:680564/1‑100 (MQ=255)

                                                                                  aaaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaa                 >  1:529659/1‑100 (MQ=255)

                                                                                   aaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaaa                <  2:1116662/100‑1 (MQ=255)

                                                                                   aaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaaa                >  2:1910598/1‑100 (MQ=255)

                                                                                   aaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaaa                >  2:1096536/1‑100 (MQ=255)

                                                                                    aCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCaaaa               <  2:1826402/100‑1 (MQ=255)

                                                                                     cGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAc              >  1:1446826/1‑100 (MQ=255)

                                                                                     cGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAc              <  1:2050660/100‑1 (MQ=255)

                                                                                      gCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAcc             <  2:235836/100‑1 (MQ=255)

                                                                                       ccTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCt            >  1:992297/1‑100 (MQ=255)

                                                                                       ccTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCt            >  1:3184321/1‑100 (MQ=255)

                                                                                         ttATCCGGCCTACAAAATCCAACAACATTAACGAATTATACAACCCGTAGGCCGGACACGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTgg          <  1:1888990/100‑1 (MQ=255)

                                                                                          tATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGc         <  1:820149/100‑1 (MQ=255)

                                                                                            tccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGt       >  1:473725‑M2/7‑100 (MQ=255)

                                                                                            tccagcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCg        <  1:449740‑M2/93‑1 (MQ=255)

                                                                                             ccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGtt      >  1:1697292‑M2/6‑100 (MQ=255)

                                                                                             ccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGtt      >  2:905716‑M2/6‑100 (MQ=255)

                                                                                             ccggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGtt      >  2:984230‑M2/6‑100 (MQ=255)

                                                                                               ggcCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTa    >  1:1190516‑M2/4‑100 (MQ=255)

                                                                                                 cCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATc  <  2:579542‑M2/99‑1 (MQ=255)

                                                                                                 cCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATc  >  2:3104243‑M2/2‑100 (MQ=255)

TGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATC  >  NC_000913/3255149‑3255345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.