New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3336922NA (NA)11 (0.090) 8/166 NT NA noncoding (4/34 nt) REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3336952 NA (NA)noncoding (34/34 nt) REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 176 total aligned reads displayed.

GTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACATTGTTGC  >  NC_000913/3336853‑3337051
                                                                                                   |                                                                                                   
 ttGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGcc                                                                                                    <  1:1526726/100‑1 (MQ=255)
 ttGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGCACAGGCGGTTAACGCCATATCCGGcc                                                                                                    <  2:2103875/100‑1 (MQ=255)
 tggcgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGTCAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGcc                                                                                                    <  1:2211687/98‑1 (MQ=255)
   gcgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTg                                                                                                  <  1:3318211/100‑1 (MQ=255)
    cgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGa                                                                                                 <  1:1315241/100‑1 (MQ=255)
    cgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGACATATCCGGcc                                                                                                    >  2:2886466/1‑97 (MQ=255)
        ggCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaa                                                                                             >  2:1184346/1‑100 (MQ=255)
        ggCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaa                                                                                             >  1:411797/1‑100 (MQ=255)
          cATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAt                                                                                           >  2:2168710/1‑100 (MQ=255)
          cATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAt                                                                                           >  2:2295685/1‑100 (MQ=255)
           aaaaaaaaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAtt                                                                                          <  1:1177152/98‑1 (MQ=255)
            taaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAttt                                                                                         >  2:1242303/1‑100 (MQ=255)
            taaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAttt                                                                                         >  2:1416072/1‑100 (MQ=255)
            taaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAttt                                                                                         <  1:1688946/100‑1 (MQ=255)
            taaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAtt                                                                                          >  2:1635098/1‑99 (MQ=255)
              aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa                                                                                       >  2:2361157/1‑100 (MQ=255)
              aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa                                                                                       >  1:2958730/1‑100 (MQ=255)
              aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa                                                                                       >  2:3116839/1‑100 (MQ=255)
              aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa                                                                                       >  1:227330/1‑100 (MQ=255)
               ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc                                                                                      <  2:2782898/100‑1 (MQ=255)
                taaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACg                                                                                     <  2:1500441/100‑1 (MQ=255)
                 aaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACgn                                                                                    <  1:3199374/100‑2 (MQ=255)
                 aaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGa                                                                                    >  1:390533/1‑100 (MQ=255)
                   gCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAgg                                                                                  <  2:60443/100‑1 (MQ=255)
                   gCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATAAAAGGACAAAAAAAATTTAACGAgg                                                                                  <  1:2909464/100‑1 (MQ=255)
                    cAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGAATGAAAAAATTTAACGAGGc                                                                                 <  1:2392704/100‑1 (MQ=255)
                     aaaaaGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCa                                                                                <  2:227045/100‑1 (MQ=255)
                      aaaaGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAg                                                                               >  2:3126223/1‑100 (MQ=255)
                         aGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAAc                                                                            <  2:2817292/100‑1 (MQ=255)
                           ccTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACAt                                                                          >  2:3216028/1‑100 (MQ=255)
                             tCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATca                                                                        <  1:801827/100‑1 (MQ=255)
                                cTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcagca                                                                     <  1:3240933/100‑1 (MQ=255)
                                 tGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATcagcag                                                                    <  1:1823276/100‑1 (MQ=255)
                                  gATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAgg                                                                   >  2:1776772/1‑100 (MQ=255)
                                   aTAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAAGGCCATATCCTGCCTGAAAAAATTTAACGATGCAGAACATCAGCAGGc                                                                  <  2:2019887/100‑1 (MQ=255)
                                    tAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCa                                                                 <  1:3102543/100‑1 (MQ=255)
                                       aTCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAt                                                              >  1:2032535/1‑100 (MQ=255)
                                        tCAGACAAGGCTCGACTTGAAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAAt                                                              >  1:723244/1‑99 (MQ=255)
                                          aGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATtat                                                           <  2:2980536/100‑1 (MQ=255)
                                          aGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATtat                                                           <  1:2168693/100‑1 (MQ=255)
                                           gACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATtata                                                          >  2:300968/1‑100 (MQ=255)
                                           gACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATtata                                                          >  1:123401/1‑100 (MQ=255)
                                               aGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAt                                                      >  1:2778926/1‑100 (MQ=255)
                                                ggCTCGAGTGGCAGGCAGGTTTGCCGGACAGGCGGGTAACGCCAGAGCCGGCCGGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATAc                                                         <  1:945979/96‑1 (MQ=255)
                                                ggCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAtt                                                     >  1:2624485/1‑100 (MQ=255)
                                                ggCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAtt                                                     >  1:1709207/1‑100 (MQ=255)
                                                ggCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAAtt                                                     <  2:73357/100‑1 (MQ=255)
                                                   tCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCg                                                  >  1:282842/1‑100 (MQ=255)
                                                   tCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCg                                                  <  1:236453/100‑1 (MQ=255)
                                                   tCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCg                                                  <  2:428438/100‑1 (MQ=255)
                                                    cGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGc                                                 <  1:1039636/100‑1 (MQ=255)
                                                       cTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttat                                              <  2:810733‑M2/100‑56 (MQ=255)
                                                       cTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAg                                              <  2:2512380/100‑1 (MQ=255)
                                                       cTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAg                                              >  1:1750968/1‑100 (MQ=255)
                                                        ttGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAgg                                             <  1:2719490/100‑1 (MQ=255)
                                                         tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg                                            <  1:957726/100‑1 (MQ=255)
                                                         tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg                                            <  2:977805/100‑1 (MQ=255)
                                                         tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg                                            >  1:1072268/1‑100 (MQ=255)
                                                         tGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAggg                                            <  1:1877323/100‑1 (MQ=255)
                                                           caggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGta                                          >  2:1074046/1‑100 (MQ=255)
                                                            aggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtat                                         >  2:2935721/1‑100 (MQ=255)
                                                             ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata                                        >  1:1942701/1‑100 (MQ=255)
                                                             ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata                                        >  2:3138880/1‑100 (MQ=255)
                                                             ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata                                        >  2:2968929/1‑100 (MQ=255)
                                                             ggcaggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGtata                                        >  2:2872721/1‑100 (MQ=255)
                                                               caggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATaca                                      >  2:1381435/1‑100 (MQ=255)
                                                               caggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATaca                                      <  2:530938/100‑1 (MQ=255)
                                                               caggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATaca                                      <  2:3350353/100‑1 (MQ=255)
                                                               caggTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATAAGCAGGCAAATTATACAATTTCGCCCGGGTATaca                                      >  2:636387/1‑100 (MQ=255)
                                                                  gTTTGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcg                                   <  1:1683081‑M2/100‑67 (MQ=255)
                                                                  gTTTGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcg                                   <  2:24699‑M2/100‑67 (MQ=255)
                                                                  gTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACtt                                   >  1:2062352/1‑100 (MQ=255)
                                                                   tttGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACttt                                  <  2:2002914/100‑1 (MQ=255)
                                                                    ttGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTg                                 <  1:3397579/100‑1 (MQ=255)
                                                                    ttGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTg                                 <  1:3126199/100‑1 (MQ=255)
                                                                     tGCCGGACAGGCGGTTAACGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaa                                <  1:2622452‑M2/100‑70 (MQ=255)
                                                                        cGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGt                             >  1:958025/1‑100 (MQ=255)
                                                                        cGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGt                             <  1:743108/100‑1 (MQ=255)
                                                                         ggACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGtt                            <  2:2418770/100‑1 (MQ=255)
                                                                              ggCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTAccc                       >  1:2537211/1‑100 (MQ=255)
                                                                              ggCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTAccc                       >  2:1208524/1‑100 (MQ=255)
                                                                              ggCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTAccc                       >  1:2984924/1‑100 (MQ=255)
                                                                               gCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTAcccc                      <  1:1512083/100‑1 (MQ=255)
                                                                                 ggTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCt                    <  2:2593269/100‑1 (MQ=255)
                                                                                     aaCGCCATATCCGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaactttgctctaagatgt                >  1:2800479‑M2/1‑15 (MQ=255)
                                                                                        gCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGt             >  2:1030334/1‑100 (MQ=255)
                                                                                          cATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTca           <  1:2467238/100‑1 (MQ=255)
                                                                                          cATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTca           <  2:2778924/100‑1 (MQ=255)
                                                                                           atatCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTcac          >  1:2878355/1‑100 (MQ=255)
                                                                                              tCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACAtt       >  1:1308840/1‑100 (MQ=255)
                                                                                               ccGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttttttatgccagcgcaactttgctctaagatgtttcgctggtt      <  1:512754‑M2/100‑96 (MQ=255)
                                                                                               ccGGCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaactttgctctaagatgtttcgctggtt      <  1:205848‑M2/100‑96 (MQ=255)
                                                                                               ccGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACAttg      >  2:1654374/1‑100 (MQ=255)
                                                                                               ccGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACAttg      <  2:306770/100‑1 (MQ=255)
                                                                                                  gCaaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaactttgctctaagatgtttcgctggtttat   <  2:1565822‑M2/100‑99 (MQ=255)
                                                                                                  gCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACAttgttg   <  2:1880684/100‑1 (MQ=255)
                                                                                                   ccTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACATTGTTGc  <  2:3289643/100‑1 (MQ=255)
                                                                                                   ccTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACATTGTTGc  >  1:3180153/1‑100 (MQ=255)
                                                                                                   caaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaactttgctctaagatgtttcgctggtttatt  >  1:3177279‑M2/1‑1 (MQ=255)
                                                                                                   caaacctgcctgcaagtcgagccttgtctgatttatcagcgaggctttttgcttatttatgccagcgcaactttgctctaagatgtttcgctggtttatt  <  2:1317524‑M2/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
GTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAGAACATCAGCAGGCAAATTATACAATTTCGCCAGGGTATACACTTTGTCGTTTACCCCCTGAAGCGTCACATTGTTGC  >  NC_000913/3336853‑3337051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.