New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3674441NA (NA)10 (0.080) 6/164 NT NA noncoding (61/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3674473 NA (NA)noncoding (93/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 150 total aligned reads displayed.

AAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATAT  >  NC_000913/3674374‑3674572
                                                                                                   |                                                                                                   
ccgatctgccggatgCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGC                                                                                                     >  1:2671655‑M2/8‑100 (MQ=255)
atcgtatgCCGGATAAGGCGTTTACGCCGCATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGc                                                                                                     >  1:232442/8‑100 (MQ=21)
 aaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCt                                                                                                    <  2:2997794/100‑1 (MQ=255)
   aTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCtat                                                                                                  <  2:2532191/100‑1 (MQ=255)
       gCCGGATGCGGCGTAAACGCCTTATCCGGCATTCGATTTGATACGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATg                                                                                              <  1:2429821/100‑1 (MQ=255)
       gCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCagatcgg                                                                                              <  2:2671675‑M2/100‑8 (MQ=255)
       gCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATg                                                                                              >  2:1678167/1‑100 (MQ=255)
        ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgc                                                                                             <  1:2158796/100‑1 (MQ=255)
         cGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcg                                                                                            <  2:179464/100‑1 (MQ=255)
          ggATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcgc                                                                                           >  2:1305732/1‑100 (MQ=255)
          ggATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcgc                                                                                           <  2:3198130/100‑1 (MQ=255)
          ggATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcgc                                                                                           <  2:2778270/100‑1 (MQ=255)
          ggATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgcgc                                                                                           <  1:991551/100‑1 (MQ=255)
           gATGCGGCGTAAACGCCTTATCGGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca                                                                                          <  1:2681211/100‑1 (MQ=255)
             tGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGcaca                                                                                        <  2:2618513/100‑1 (MQ=255)
              gcggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGcaca                                                                                        <  1:1622968/99‑1 (MQ=255)
              gcggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACAt                                                                                       <  1:1267055/100‑1 (MQ=255)
                  cgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGAATCGAATCCGGATCTACTGCGACCATCAcc                                                                                   >  2:1497601/1‑100 (MQ=25)
                    tAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctc                                                                                 >  2:1287316/1‑100 (MQ=255)
                     aaaCGCCTTATCCGGTATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct                                                                                <  2:3398219/100‑1 (MQ=255)
                     aaaCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct                                                                                >  1:2720607/1‑100 (MQ=255)
                     aaaCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACctct                                                                                >  2:3375269/1‑100 (MQ=255)
                      aaCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCtt                                                                               <  2:52621/100‑1 (MQ=255)
                        cGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGa                                                                             <  2:2541636/100‑1 (MQ=255)
                         gCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGaa                                                                            >  2:966065/1‑100 (MQ=255)
                         gCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGaa                                                                            <  1:1744900/100‑1 (MQ=255)
                           cTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAAc                                                                          >  2:832225/1‑100 (MQ=255)
                            ttATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACt                                                                         <  2:3221949/100‑1 (MQ=255)
                              aTCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCg                                                                       <  1:1251979/100‑1 (MQ=255)
                              aTCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCg                                                                       >  2:1245471/1‑100 (MQ=255)
                              aTCCGGCATACGATTTTATTCGGACTGGCTCCCCGTAGGCCGGATAAGATGCGCCACCATCGCATCCGGCTAGCATGCGCACATAACCTCTTGaaatccg                                                                       >  1:3445754/1‑96 (MQ=37)
                               tCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGt                                                                      >  1:759366/1‑100 (MQ=255)
                                ccGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTc                                                                     >  2:1446669/1‑100 (MQ=255)
                                 cGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTcc                                                                    <  2:2652747/100‑1 (MQ=255)
                                      tACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCaga                                                               >  2:2968346/1‑100 (MQ=255)
                                        cGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCagag                                                              >  2:921577/1‑99 (MQ=255)
                                        cGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGc                                                             >  1:317137/1‑100 (MQ=255)
                                         gATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGcc                                                            <  2:2494619/100‑1 (MQ=255)
                                         gATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGcc                                                            <  1:683435/100‑1 (MQ=255)
                                          aTTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCct                                                           >  2:415767/1‑100 (MQ=255)
                                          aTTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGACAGCATCGCATCCGGCTATCATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCct                                                           >  1:1890397/1‑100 (MQ=255)
                                            tttATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCctct                                                         >  1:1157823/1‑100 (MQ=255)
                                                ttCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAg                                                     <  1:1837029/100‑1 (MQ=255)
                                                  cGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGcc                                                   <  1:420994/100‑1 (MQ=255)
                                                    gCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCAt                                                 >  1:1708885/1‑100 (MQ=255)
                                                     ccTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATc                                                <  1:2623356/100‑1 (MQ=255)
                                                      cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCt                                               <  1:3073336/100‑1 (MQ=255)
                                                       tGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTa                                              >  2:3025359/1‑100 (MQ=255)
                                                          cTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatcc                                           <  2:1930299‑M2/100‑59 (MQ=255)
                                                           tCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTg                                          <  2:3040817/100‑1 (MQ=255)
                                                           tCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTg                                          <  2:391115/100‑1 (MQ=255)
                                                           tCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTg                                          >  2:1782809/1‑100 (MQ=255)
                                                             cacGTAGGCCGGAGAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTggg                                        <  1:2882154/98‑1 (MQ=255)
                                                              ccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGa                                       >  1:2574744/1‑100 (MQ=255)
                                                               cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAg                                      <  1:2044658/100‑1 (MQ=255)
                                                               cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAg                                      <  2:529914/100‑1 (MQ=255)
                                                                gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGc                                     <  1:3213591/100‑1 (MQ=255)
                                                                  aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCaa                                   >  2:1150453/1‑100 (MQ=255)
                                                                   ggCCGGATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattt                                  <  2:521352‑M2/100‑68 (MQ=255)
                                                                    gCCGGATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattt                                  <  1:2657346‑M2/99‑68 (MQ=255)
                                                                    gCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGGCTCTGCAGCCATCTATGTGGGAGCAAAc                                 <  1:3285448/100‑1 (MQ=255)
                                                                     ccGGATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctatttta                                <  1:1345506‑M2/100‑70 (MQ=255)
                                                                      cGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACaa                               >  1:2945947/1‑100 (MQ=255)
                                                                      cGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACa                                <  1:522624/99‑1 (MQ=255)
                                                                       ggATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaag                              <  2:1828596‑M2/100‑72 (MQ=255)
                                                                       ggATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaag                              <  1:1304887‑M2/100‑72 (MQ=255)
                                                                        gATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaagg                             <  1:105731‑M2/100‑73 (MQ=255)
                                                                        gATAAGATGCGCCAGCATCGCATCCGGCTATAATTCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAAt                              >  1:3405051/1‑99 (MQ=255)
                                                                        gATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAAtt                             >  2:2067401/1‑100 (MQ=255)
                                                                           aaGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCa                          <  1:57427/100‑1 (MQ=255)
                                                                            aGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCAt                         >  1:315321/1‑100 (MQ=255)
                                                                            aGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCAt                         >  2:366260/1‑100 (MQ=255)
                                                                            aGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCAt                         >  2:1925210/1‑100 (MQ=255)
                                                                            aGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCAt                         >  2:3205718/1‑100 (MQ=255)
                                                                            aGATGCGCCAGCATCGAATCCGGCTATAATGCGCACCTAACCTCTTGACCCTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCAt                         <  1:1150442/100‑1 (MQ=255)
                                                                             gATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCAtt                        >  1:3361016/1‑100 (MQ=255)
                                                                             gATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTAAGCCATATATTTGGGAGCAAACAATTTCAtt                        >  1:2196426/1‑100 (MQ=255)
                                                                              aTGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTc                       <  2:2720628/100‑1 (MQ=255)
                                                                              aTGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTc                       <  1:2898770/100‑1 (MQ=255)
                                                                                gcgcCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCa                     >  2:3200754/1‑100 (MQ=255)
                                                                                 cgcCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCaa                    >  2:1853723/1‑100 (MQ=255)
                                                                                   ccAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACt                  <  2:3182036/100‑1 (MQ=255)
                                                                                   ccAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACt                  >  2:2362615/1‑100 (MQ=255)
                                                                                   ccAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACt                  >  2:454158/1‑100 (MQ=255)
                                                                                     aGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCa                <  2:2099247/100‑1 (MQ=255)
                                                                                         tcgcatcCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAAc            >  2:795661/1‑100 (MQ=255)
                                                                                             atcCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCa        <  2:173488/100‑1 (MQ=255)
                                                                                              tcCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAg       <  2:2750261/100‑1 (MQ=255)
                                                                                               ccGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGc      <  1:1760541/100‑1 (MQ=255)
                                                                                                cGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgg     >  2:2896548‑M2/1‑4 (MQ=255)
                                                                                                cGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgg     >  2:683439‑M2/1‑4 (MQ=255)
                                                                                                 ggCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcggg    >  1:975128‑M2/1‑3 (MQ=255)
                                                                                                 ggCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcggg    >  2:2780047‑M2/1‑3 (MQ=255)
                                                                                                 ggCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcggg    >  2:2447792‑M2/1‑3 (MQ=255)
                                                                                                 ggCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcggg    >  2:634100‑M2/1‑3 (MQ=255)
                                                                                                 ggCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattagcggg    >  2:3332943‑M2/1‑3 (MQ=255)
                                                                                                 ggCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCat    >  1:3181035/1‑100 (MQ=255)
                                                                                                  gCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcg      >  1:1098432‑M2/1‑2 (MQ=255)
                                                                                                  gCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCata   >  2:360002/1‑100 (MQ=255)
                                                                                                   cctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgggtc  <  2:2900533‑M2/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
AAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATAT  >  NC_000913/3674374‑3674572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.